SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46934

Length: 222 nt

UniGene Fasta

>uagpf_v2_unigene46934
CGTCGTGACCTTGGCTGTCACTCATGTGGTGATTGAACTTTACAGGAGCAGCATTACTACTGTGGATATTCTTACTACTGAACTGCGCGGCCATGTCTCGCACTACTGTGATAGAATGTCAGGGCTGCCCCCCAATGAGGGCACTGACATTCGATGCTTTGGGGTTGATTAAAGTTATTCAAGTTCAAGGAGAAAAAGGCTTGCCAGAGGTCGTTGACAGAT

Ace file of the UniGene uagpf_v2_unigene46934

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10047	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative	-	-	55%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	69%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	66%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9IF75

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 43 - 365

Fln protein: MSRTTVIECQGCPPMRALTFDALGLIKVIQVQGEKGLPEVVDR

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGGTGATTGAACTTTACAGGAGCAGCATTACTACTGTGGATATTCTTACTACTGAACTGCGCGGCC_-_ATGTCTCGCACTACTGTGATAGAATGTCAGGGCTGCCCCCCAATGAGGGCACTGACATTCGATGCTTTGGGGTTGATTAAAGTTATTCAAGTTCAAGGAGAAAAAGGCTTGCCAGAGGTCGTTGACAGAT

Fln Alignment:

uagpf_mira_rep_c48025___MSRTTVIECQGCPPMRALTFDALGLIKVIQVQGEKGLPEVVDR
B9IF75________________MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERGIPQVVER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain