SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46924

Length: 197 nt

UniGene Fasta

>uagpf_v2_unigene46924
CGTCGTGACCTTGGCTGTCACTCAATTTTAATGAAAGCAGGTGGGATTGCCCTGGCCATGCTTTATGTATGGAATTCAGGGACTGCAGATATTTATCAGTTGCTAATATTTTCTCAGGTCTTGTTGGCTATGCAACTTCCAGCTGCTGTGATACCTCTTTTAGAGTGGCATCTTCAAGTTCAGTAATGGGCACTCAT

Ace file of the UniGene uagpf_v2_unigene46924

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39461	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ethylene signaling protein [Solanum lycopersicum]	-	-	1.0e-27	45%
FL-Next	sp=Ethylene-insensitive protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	ethylene-insensitive protein 2-like	-	-	1.13621e-33	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of defense response	GO:0031348	Biological Process	1.13621e-33	67%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	1.13621e-33	67%
Blast2go	response to salt stress	GO:0009651	Biological Process	1.13621e-33	67%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	1.13621e-33	67%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	1.13621e-33	67%
Blast2go	defense response to fungus	GO:0050832	Biological Process	1.13621e-33	67%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.13621e-33	67%
Blast2go	establishment of planar polarity	GO:0001736	Biological Process	1.13621e-33	67%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	1.13621e-33	67%
Blast2go	leaf senescence	GO:0010150	Biological Process	1.13621e-33	67%
Blast2go	auxin polar transport	GO:0009926	Biological Process	1.13621e-33	67%
Blast2go	response to heat	GO:0009408	Biological Process	1.13621e-33	67%
Blast2go	response to molecule of bacterial origin	GO:0002237	Biological Process	1.13621e-33	67%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	1.13621e-33	67%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	1.13621e-33	67%
Blast2go	cellular response to iron ion	GO:0071281	Biological Process	1.13621e-33	67%
Blast2go	protein binding	GO:0005515	Molecular Function	1.13621e-33	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	0.0	-
Sma3	Ethylene-insensitive 2	IPR017187	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S814

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 906 aas, your sequence is shorter than subject: 62 - 1294

Fln protein: RRDLGCHSILMKAGGIALAMLYVWNSGTADIYQLLIFSQVLLAMQLPAAVIPLLEWHLQVQ*

Protein Length: 63

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAATGAAAGCAGGTGGGATTGCCCTGGCCATGCTTTATGTATGGAATTCAGGGACTGCAGATATTTATCAGTTGCTAATATTTTCTCAGGTCTTGTTGGCTATGCAACTTCCAGCTGCTGTGATACCTCTTTTAGAGTGGCATCTTCAAGTTCAGTAATGGGCACTCAT

Fln Alignment:

uagpf_mira_rep_c48012___HSILMKAGGIALAMLYVWNSGTADIYQLLIFSQVLLAMQLPAAVIPL
Q9S814________________HRATIRILAVAPALYCVWTSGADGIYQLLIFTQVLVAMMLPCSVIPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain