SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46893

Length: 428 nt

UniGene Fasta

>uagpf_v2_unigene46893
CGTCGTGACCTTGGCTGTCACTAAGGAACAGCAATTTATTCACAAGCGTTTAAAAGATTTGATGAATAAACAGAAAGGAAGAATAGTGAGGACGATTGTTAAAAACAGAGATGATTCAAAACCTTGGGGTAATGCTCTGCAGGCCAAGGTGGGAAGTCGTTTGATAGAGCTCCTACTACAAGCAAGCTTCATACAACCTCCTGTTGATCAGTCTGCAGAAGGACCTCCAGAAATTAGACCTGCATTTAAACACACATTGAAGACAGTAATGATGGGACAAAAGATTGTGAAGAGATATGGTGTTATAGAATGTGATCCGCTGGTGAAGAGGGGACTTGAAAGAACGGCAAGGCACATGGTGATCCCTTACATGCCAATGTTTGTCAAACCTATTCCATGGACAGGGTATGATAAGGGAGGTTATTTAA

Ace file of the UniGene uagpf_v2_unigene46893

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10368	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TA90_VITVI	-	-	66%
FL-Next	sp=DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial; Nicotiana tabacum (Common tobacco).	-	-	62%
Blast2go	phage-type rna polymerase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	77%
Blast2go	Pyrimidine metabolism	00240	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	77%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	77%
Blast2go	DNA binding	GO:0003677	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, phage-type	IPR002092	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L6J3

Fln msg: Distance to subject end: 553 aas, your sequence is shorter than subject: 142 - 1021

Fln protein: VVTLAVTKEQQFIHKRLKDLMNKQKGRIVRTIVKNRDDSKPWGNALQAKVGSRLIELLLQASFIQPPVDQSAEGPPEIRPAFKHTLKTVMMGQKIVKRYGVIECDPLVKRGLERTARHMVIPYMPMFVKPIPWTGYDKGGYL

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTAAGGAACAGCAATTTATTCACAAGCGTTTAAAAGATTTGATGAATAAACAGAAAGGAAGAATAGTGAGGACGATTGTTAAAAACAGAGATGATTCAAAACCTTGGGGTAATGCTCTGCAGGCCAAGGTGGGAAGTCGTTTGATAGAGCTCCTACTACAAGCAAGCTTCATACAACCTCCTGTTGATCAGTCTGCAGAAGGACCTCCAGAAATTAGACCTGCATTTAAACACACATTGAAGACAGTAATGATGGGACAAAAGATTGTGAAGAGATATGGTGTTATAGAATGTGATCCGCTGGTGAAGAGGGGACTTGAAAGAACGGCAAGGCACATGGTGATCCCTTACATGCCAATGTTTGTCAAACCTATTCCATGGACAGGGTATGATAAGGGAGGTTATTTAA

Fln Alignment:

uagpf_mira_rep_c47964___VTKEQQFIHKRLKDLMNKQKGRIVRTIVKNRDDSKPWGNALQAKVGSRLIELLLQASFIQPPVDQSAEGPPEIRPAFKHTLKTVMMGQKIV-KRYGVIECDPLVKRGLERTARHMVIPYMPMFVKPIPWTGYDKGGYL
Q8L6J3________________VTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain