SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46870

Length: 227 nt

UniGene Fasta

>uagpf_v2_unigene46870
CGTCGTGACCTTGGCTGTCACTCATTATGTTTAGCAAAGAAGATACTGCAGCTACCTGCTGCTGCTGTGAAGGCTTTTGCTGGCACGAAAGAAGGGCTTGGCATTCTAAACAAATGGATCCTGGATTCCATGGGCAAAGATGGAACACAACTCTTGCGCCACTGTGTACGGTTGCTACTGATTGTTTCGACTGATATGATTGCAGTACGGCAATCTGGTATTGGAAG

Ace file of the UniGene uagpf_v2_unigene46870

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21732	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	lysine-specific histone demethylase-like protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3		IPR000759	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF3

Fln msg: Distance to subject end: 454 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 75 - 533

Fln protein: RRDLGCHSLCLAKKILQLPAAAVKAFAGTKEGLGILNKWILDSMGKDGTQLLRHCVRLLLIVSTDMIAVRQSGIG

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATGTTTAGCAAAGAAGATACTGCAGCTACCTGCTGCTGCTGTGAAGGCTTTTGCTGGCACGAAAGAAGGGCTTGGCATTCTAAACAAATGGATCCTGGATTCCATGGGCAAAGATGGAACACAACTCTTGCGCCACTGTGTACGGTTGCTACTGATTGTTTCGACTGATATGATTGCAGTACGGCAATCTGGTATTGGAAG

Fln Alignment:

uagpf_mira_rep_c47934___LCLAKKILQLPAAAVKAFAGTKEGLGILNKWILDSMGKDGTQLLRHCVRLLLIVSTDMIAVRQSGIG
A9NUF3________________LCLAKKILQLPAAAVKSFAGTKEGLSILNKWILDSMGKDGTQLLRHCVRLLLIVSTDMLAVRQSGIG

SSRs (tot: 1)

Start position	End position	Sequence	Length
56	67	CTG CTG CTG CTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain