SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46837

Length: 292 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene46837
GACTCGGAGCAGCAGAAAAGGAAGCGGATTACCACCAAGAAAATGATGAGATTTGTCGAGAGACTGATGGAAAGAGTCATGGAGAAGCAGAAATGATGCAGCAGAGATTCTTGAAATGATCGATAAGCGCGAGCAGGATAGGATGATCCGTGAAGAAGCTTGGAGGCGGCAAGAAAATGTCAGGTTGAGTAGAGAAAGCGAACTGAGGTCGCAGGAACGAGCTCTCACCGCATCAAGAGATAGAGCACTAATTGCCTTTCTCCAAAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene46837 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene65540	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAP7 domain containing protein	-	-	0.0001	42%
FL-Next	sp=Trihelix transcription factor GTL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Blast2go	protein	-	-	2.69092e-25	83%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C882

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 238 aas, your sequence is shorter than subject: 90 - 587

Fln protein: TRSSRKGSGLPPRK**DLSRD*WKESWRSRNDAAEILEMIDKREQDRMIREEAWRRQENVRLSRESELRSQERALTASRDRALIAFLQK*

Protein Length: 91

Fln nts: GACTCGGAGCAGCAGAAAAGGAAGCGGATTACCACCAAGAAAATGATGAGATTTGTCGAGAGACTGATGGAAAGAGTCATGGAGAAGCAGAAATGATGCAGCAGAGATTCTTGAAATGATCGATAAGCGCGAGCAGGATAGGATGATCCGTGAAGAAGCTTGGAGGCGGCAAGAAAATGTCAGGTTGAGTAGAGAAAGCGAACTGAGGTCGCAGGAACGAGCTCTCACCGCATCAAGAGATAGAGCACTAATTGCCTTTCTCCAAAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c47889___LEMIDKREQDRMIREEAWRRQENVRLSRESELRSQERALTASRDRALIAFLQK
Q9C882________________LEALEKREQERLDREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLIQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain