SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46701

Length: 463 nt

UniGene Fasta

>uagpf_v2_unigene46701
CGTCGTGACCTTGGCTGTCACTCATTTGCTACTTCTGAAACTAGCCAGCCTGGTGGTACGTCGTGTCCTTGGCTGTGGTTTTCCATTTCCTCCATTCCCTACTCCTGAAACTCCCTTGTCATCCACACCGACAGTTGATGTGACTGCAACCAATGTAATGACTGAATTTACTGAGGTCAATGGAGCAGTTGAAACAAAAGTGGAGCCCAAGAAGCCTGCATTTGTGGATGTTAGCCCGGAGGAAGTGTTAGATGAGAAACCTTATGTTGGAGCTCCACAAGATTCTACAGAGAAGAACATTCCTAAGGATTCAGAAGTTAAAACTCAGGCAGACGAGGGTGCGCCTGGTAAATCTTCTGATTTTACTGGAACAGCTGGTCCGATTCTAAGTGTAGAGGCCTTGGAGAAAATGATGGAAGATCCAGTAGTTCAGAAGATGGTCTATCCGTATTTGCCCCTTTGC

Ace file of the UniGene uagpf_v2_unigene46701

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene983	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast protein translocon component Tic40 precursor [Pisum sativum]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	translocon tic40	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	66%
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	66%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock chaperonin-binding	IPR006636	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLS2

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 154 - 450

Fln protein: VVTLAVTHLLLLKLASLVVRRVLGCGFPFPPFPTPETPLSSTPTVDVTATNVMTEFTEVNGAVETKVEPKKPAFVDVSPEEVLDEKPYVGAPQDSTEKNIPKDSEVKTQADEGAPGKSSDFTGTAGPILSVEALEKMMEDPVVQKMVYPYLPLC

Protein Length: 155

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCTACTTCTGAAACTAGCCAGCCTGGTGGTACGTCGTGTCCTTGGCTGTGGTTTTCCATTTCCTCCATTCCCTACTCCTGAAACTCCCTTGTCATCCACACCGACAGTTGATGTGACTGCAACCAATGTAATGACTGAATTTACTGAGGTCAATGGAGCAGTTGAAACAAAAGTGGAGCCCAAGAAGCCTGCATTTGTGGATGTTAGCCCGGAGGAAGTGTTAGATGAGAAACCTTATGTTGGAGCTCCACAAGATTCTACAGAGAAGAACATTCCTAAGGATTCAGAAGTTAAAACTCAGGCAGACGAGGGTGCGCCTGGTAAATCTTCTGATTTTACTGGAACAGCTGGTCCGATTCTAAGTGTAGAGGCCTTGGAGAAAATGATGGAAGATCCAGTAGTTCAGAAGATGGTCTATCCGTATTTGCCCCTTTGC

Fln Alignment:

uagpf_mira_rep_c47698___VDVTATNVMTEFTEVNGAVETKVEPKKPAFVDVSPEEVLDEKPYVGAPQDSTEKNIPKDSEVKTQADEGAPGKSSDFTGTAGPILSVEALEKMMEDPVVQKMVYPYLP
B8LLS2________________VDVPATKVTTEFTEVNGALETKVEPKKPAFVDVSPEEVLDQKSYVEAPQDSTEKNVPKDSEVETQADGGATGKSSNFTGTADPILSVDALEKMMEDPVVQKMVYPYLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain