SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46674

Length: 368 nt

UniGene Fasta

>uagpf_v2_unigene46674
CGTCGTGACCTTGGCTGTCACTCATTTTTACGGCACCAGAATGCTGTTTAGGCTTGACATACCATGGTAAAGCTGCAGATGTCTGGGCATTGGGTGTGACACTTTACTGTCTAGTGCTGGGTCAGTATCCTTTTATCGGTGAAACATTGCAGGATACTTATGATAAGATAGTCAACGATGAATTAATCATTCCTGAGGATCCTAACAAAAGGATGACCTTGGATGTTGTTGCAATTCATCCATGGGTTGTAAGAGGCTATGGGCCAGTCCAGCAAGATTTATGGAGATGTGAGCATGGCAGCTTTACAAATTGTACTGAACAGTGTGTAGAGGCTGTAGCTTCTTCAGCAGATCTGTCTAAATCAGTT

Ace file of the UniGene uagpf_v2_unigene46674

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34996	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine-protein kinase-like protein [Arabidopsis thaliana]	-	-	1.0e-27	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	calcium calmodulin-dependent protein kinase kinase	-	-	2.05339e-35	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	2.05339e-35	67%
Blast2go	kinase activity	GO:0016301	Molecular Function	2.05339e-35	67%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWJ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 127 aas, your sequence is shorter than subject: 122 - 427

Fln protein: S*PWLSLIFTAPECCLGLTYHGKAADVWALGVTLYCLVLGQYPFIGETLQDTYDKIVNDELIIPEDPNKRMTLDVVAIHPWVVRGYGPVQQDLWRCEHGSFTNCTEQCVEAVASSADLSKSV

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTACGGCACCAGAATGCTGTTTAGGCTTGACATACCATGGTAAAGCTGCAGATGTCTGGGCATTGGGTGTGACACTTTACTGTCTAGTGCTGGGTCAGTATCCTTTTATCGGTGAAACATTGCAGGATACTTATGATAAGATAGTCAACGATGAATTAATCATTCCTGAGGATCCTAACAAAAGGATGACCTTGGATGTTGTTGCAATTCATCCATGGGTTGTAAGAGGCTATGGGCCAGTCCAGCAAGATTTATGGAGATGTGAGCATGGCAGCTTTACAAATTGTACTGAACAGTGTGTAGAGGCTGTAGCTTCTTCAGCAGATCTGTCTAAATCAGTT

Fln Alignment:

uagpf_mira_rep_c47655___FTAPECCLGLTYHGKAADVWALGVTLYCLVLGQYPFIGE----TLQDTYDKIVNDELIIPE------------------DPNKRMTLDVVAIHPWVVR
A9NWJ2________________YIAPEVLSRKEYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTIQRIMSVQYTIPDYVHVSPECKQLLGRIFVANPHKRITIREIRHHPWFLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain