SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46653

Length: 341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene46653
GCTGGTTGGATATTGGAGATTACTGTATTTTTCTTGGTGATATAAGATGGCCAAAATGCAAAGTGCTCGTTTTGAAATTGAAAAATTTAATGGAAAGAATAATTTTGAGATTTGGAAGGTGAAGATGCGCGATATACTGGTCCAGCAAGGTGTGGCAAAAGCACTGTTGGGGAAAAGCAAAAGACCTCCTTCCATGACGGAGGATGAATGGGATGAGATGGACGATAGAGCTTTGAGCGCAATTTGGTTATGTCTGGCGGACGATGTTCTGTTCAACATTGTGTCAGAGAAAACCACCGCAGGCTTGTGGACGAAGCTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene46653 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene75408	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI	-	-	1.0e-19	50%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	47%
Blast2go	retrotransposon ty1-copia subclass	-	-	1.06434e-22	68%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: Distance to subject end: 1233 aas, your sequence is shorter than subject: 98 - 1328

Fln protein: MAKMQSARFEIEKFNGKNNFEIWKVKMRDILVQQGVAKALLGKSKRPPSMTEDEWDEMDDRALSAIWLCLADDVLFNIVSEKTTAGLWTKLSDSQGHD

Protein Length: 99

Fln nts: GCTGGTTGGATATTGGAGATTACTGTATTTTTCTTGGTGATATAAG_-_ATGGCCAAAATGCAAAGTGCTCGTTTTGAAATTGAAAAATTTAATGGAAAGAATAATTTTGAGATTTGGAAGGTGAAGATGCGCGATATACTGGTCCAGCAAGGTGTGGCAAAAGCACTGTTGGGGAAAAGCAAAAGACCTCCTTCCATGACGGAGGATGAATGGGATGAGATGGACGATAGAGCTTTGAGCGCAATTTGGTTATGTCTGGCGGACGATGTTCTGTTCAACATTGTGTCAGAGAAAACCACCGCAGGCTTGTGGACGAAGCTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c47624___MQSARFEIEKFNGKNNFEIWKVKMRDILVQQGVAKALLGKSKRPPSMTEDEWDEMDDRALSAIWLCLADDVLFNIVSEKTTAGLWTKL
P10978________________MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain