SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46588

Length: 337 nt

UniGene Fasta

>uagpf_v2_unigene46588
CGTCGTGACCTTGGCTGTCACTCAGGTTAATATTTTCTATCTCATAAGCCATCTTAGAATGCCAAGTTTGCCAAATCCACCAGTAGTTATTTTGCATCCTCGTGAACTAGGTTCTTCTGACTGGGGTTGCGTTGGAATGTTTGAAGACGTTTATTTTATAAAAGGATCACCTTTGTATGAGCTAGATCTGTTACGTGCTGGAGTAATGCAAGCAGAAAAAGTGATCATATTGGCACAACGGTGCCGAGAGGAAGAAACTATTGATGCAAATGAATCATCTGCTACAACGGTAGCTTCTTATGATATCAACAACATTCTCATAGCTGCAACTGTTGAA

Ace file of the UniGene uagpf_v2_unigene46588

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4787	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cation channel family protein [Tetrahymena thermophila] gb\|EAR83473.1\| cation channel family protein [Tetrahymena thermophila SB210]	-	-	2.0e-19	27%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	55%
Blast2go	protein	-	-	0.0	54%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	54%
Blast2go	catalytic activity	GO:0003824	Molecular Function	54%
Blast2go	ion channel activity	GO:0005216	Molecular Function	54%
Blast2go	membrane	GO:0016020	Cellular Component	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Potassium channel, calcium-activated, BK, alpha subunit	IPR003929	-	0.0	-
Sma3	Ion transport 2	IPR013099	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RGT7

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 112 - 712

Fln protein: VVTLAVTQVNIFYLISHLRMPSLPNPPVVILHPRELGSSDWGCVGMFEDVYFIKGSPLYELDLLRAGVMQAEKVIILAQRCREEETIDANESSATTVASYDINNILIAATVE

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTAATATTTTCTATCTCATAAGCCATCTTAGAATGCCAAGTTTGCCAAATCCACCAGTAGTTATTTTGCATCCTCGTGAACTAGGTTCTTCTGACTGGGGTTGCGTTGGAATGTTTGAAGACGTTTATTTTATAAAAGGATCACCTTTGTATGAGCTAGATCTGTTACGTGCTGGAGTAATGCAAGCAGAAAAAGTGATCATATTGGCACAACGGTGCCGAGAGGAAGAAACTATTGATGCAAATGAATCATCTGCTACAACGGTAGCTTCTTATGATATCAACAACATTCTCATAGCTGCAACTGTTGAA

Fln Alignment:

uagpf_mira_rep_c47535___NIFYLISHLRMPSLPNPPVVILHPRELGSSDWGCVGMFEDVYFIKGSPLYELDLLRAGVMQAEKVIILAQRCREEETI-----DANESSATTVASYDINNILIAATVE
A9RGT7________________SLFYFVSQLRTPGLPNSPVVILHPNFPSESDWGNVGFFDDVYFVKGSPSLGLDLLRAGVIQAEKVVILTQGVQLEQSIGEHADDQDRSAPSQTFTLDVNNVFIAATVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain