SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46562

Length: 274 nt

UniGene Fasta

>uagpf_v2_unigene46562
CGTCGTGACCTTGGCTGTCACTCAAAAATTTTCATGGCCATCTGGAGCGACTTATGAAGGTGATTTTTTGAGTGGATTCATGCATGGTTTTGGGACATATACTGGAATTGATGGTACCACTTATAAAGGGAACTGGACATTGAATGTAAAACATGGACGAGGGCAGAAAAGCTATTCAAATGGGGATGTTTATGAAGGTTCATGGAATCAGGGAGTGCCAGAGGGGCTTGGGAAATATGTATGGAAAAATGGAACTGTCTACAAAGGGGATTGG

Ace file of the UniGene uagpf_v2_unigene46562

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene83	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9S0D1_RICCO	-	-	61%
FL-Next	sp=Phosphatidylinositol-4-phosphate 5-kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	phosphatidylinositol-4-phosphate 5-kinase 9	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	1-phosphatidylinositol-4-phosphate 5-kinase.	EC:2.7.1.68	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Phosphatidylinositol signaling system	04070	73%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylinositol metabolic process	GO:0046488	Biological Process	73%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	phosphorylation	GO:0016310	Biological Process	73%
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	1-phosphatidylinositol-4-phosphate 5-kinase activity	GO:0016308	Molecular Function	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%
Blast2go	cytosol	GO:0005829	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	MORN motif	IPR003409	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup	IPR016034	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, plant	IPR017163	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q56YP2

Fln msg: Distance to subject end: 552 aas, your sequence is shorter than subject: 91 - 752

Fln protein: VVTLAVTQKFSWPSGATYEGDFLSGFMHGFGTYTGIDGTTYKGNWTLNVKHGRGQKSYSNGDVYEGSWNQGVPEGLGKYVWKNGTVYKGDW

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAATTTTCATGGCCATCTGGAGCGACTTATGAAGGTGATTTTTTGAGTGGATTCATGCATGGTTTTGGGACATATACTGGAATTGATGGTACCACTTATAAAGGGAACTGGACATTGAATGTAAAACATGGACGAGGGCAGAAAAGCTATTCAAATGGGGATGTTTATGAAGGTTCATGGAATCAGGGAGTGCCAGAGGGGCTTGGGAAATATGTATGGAAAAATGGAACTGTCTACAAAGGGGATTGG

Fln Alignment:

uagpf_mira_rep_c47499___KFSWPSGATYEGDFLSGFMHGFGTYTGIDGTTYKGNWTLNVKHGRGQKSYSNGDVYEGSWNQGVPEGLGKYVWKNGTVYKGDW
Q56YP2________________KFSWPSGATYEGEFKSGRMEGFGTFTGADGDTYRGTWVADRKHGHGQKRYANGDFYEGTWRRNLQDGRGRYVWRNGNQYTGEW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain