SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46400

Length: 331 nt

UniGene Fasta

>uagpf_v2_unigene46400
CGTCGTGACCTTGGCTGTCACTCATTTTATGTCTCTTGTTGCAGGCAGCATTCTTGTATGTGTTTAAGACAATGTTGGGTGGGATTGGCATTTGGAATTCCTACAGCATTTATGGGATTAGCCATATTAAATTTCTTTACTGGGGTGCCACTGTATAAATTCCAGAAGTCTGGAGACATTTCTGTTATGCATTCATGCCAAGTCATAGTTGCATGACTTCATAAATTGCAGAAGAAAGTCCCTTAACATAATTCAATGCTGTACGAGTTGCAAATTCCTCAACATAATTCTATGTTGTACAAGGTGGATGACAAAAACTTACGCAACTCAA

Ace file of the UniGene uagpf_v2_unigene46400

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64373	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter n=1 Tax=Hakea actites RepID=A6YJX4_9MAGN	-	-	3.0e-14	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	peptide transporter ptr2-like	-	-	6.07045e-16	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	6.07045e-16	61%
Blast2go	dipeptide transport	GO:0042938	Biological Process	6.07045e-16	61%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	6.07045e-16	61%
Blast2go	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	6.07045e-16	61%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	6.07045e-16	61%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	6.07045e-16	61%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	6.07045e-16	61%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	6.07045e-16	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Overlapping hits, possible frame ERROR between 88 and 82, Unexpected STOP codon at 3' end. Distance to subject end: 275 aas, your sequence is shorter than subject: 82 - 594

Fln protein: VVTLAVTHFMSLVAGSILVCV*DNVGxxxxFGIPTAFMGLAILNFFTGVPLYKFQKSGDISVMHSCQVIVA*LHKLQKKVP*

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATGTCTCTTGTTGCAGGCAGCATTCTTGTATGTGTTTAAGACAATGTTGGGxxxxxxxxxxxxTTTGGAATTCCTACAGCATTTATGGGATTAGCCATATTAAATTTCTTTACTGGGGTGCCACTGTATAAATTCCAGAAGTCTGGAGACATTTCTGTTATGCATTCATGCCAAGTCATAGTTGCATGACTTCATAAATTGCAGAAGAAAGTCCCTTAACATAATTCAATGCTGTACGAGTTGCAAATTCCTCAACATAATTCTATGTTGTACAAGGTGGATGACAAAAACTTACGCAACTCAA

Fln Alignment:

uagpf_mira_rep_c47273___SLVAGSILVCV*DNVGWxxAFGIPTAFMGLAILNFFTGVPLYKFQKSGDISVMHSCQVIVA*LHKLQKKVP*HNSMLYELQ
A9NVR2________________ALVSSSVLVWVQDNVGWxxGFGIPTLFMGLAIGSFFSGTPLYRLQKPGGSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain