SustainPineDB

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Assembly info
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SSRs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46075

Length: 214 nt

UniGene Fasta

>uagpf_v2_unigene46075
CGTCGTGACCTTGGCTGTCACTCATTTTTTCACACAATTCGCTGACTTGTAATACAATGATGAGTATCTTGGCCAGAACGAAGCAGTTCGTGACAATGTTTGAACTTTTGAACGAGATGGGCAAGATGGGATCTGTTCTGACAATTGAGACCTTCGAGATAGCCATCAAGGCCTTTGCAGCTGCCAGGGAGATGAAGAAGGCGGTGCAGATGTT

Ace file of the UniGene uagpf_v2_unigene46075

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene76458	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LEQ7.1\|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g14820, mitochondrial; Flags: Precursor emb\|CAC01881.1\| putative protein [Arabidopsis thaliana] gb\|AED9	-	-	3.0e-12	65%
FL-Next	sp=Pentatricopeptide repeat-containing protein At5g14820, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	pentatricopeptide repeat-containing protein	-	-	3.27249e-15	76%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LEQ7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 347 aas, your sequence is shorter than subject: 70 - 598

Fln protein: S*PWLSLIFSHNSLTCNTMMSILARTKQFVTMFELLNEMGKMGSVLTIETFEIAIKAFAAAREMKKAVQM

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTCACACAATTCGCTGACTTGTAATACAATGATGAGTATCTTGGCCAGAACGAAGCAGTTCGTGACAATGTTTGAACTTTTGAACGAGATGGGCAAGATGGGATCTGTTCTGACAATTGAGACCTTCGAGATAGCCATCAAGGCCTTTGCAGCTGCCAGGGAGATGAAGAAGGCGGTGCAGATGTT

Fln Alignment:

uagpf_mira_rep_c46782___FSHNSLTCNTMMSILARTKQFVTMFELLNEMGKMGSVLTIETFEIAIKAFAAAREMKKAV
Q9LEQ7________________FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain