SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45914

Length: 224 nt

UniGene Fasta

>uagpf_v2_unigene45914
CGTCGTGACCTTGGCTGTCACTCAATGATGGCAAATTCTTACACCTGCCAGTTGTGGATAGAGATGGATTTGTTGTGGCCTGTATAGACGTGTTGCAAATTACCCATGCAGCAATGGCCACTGTGGGAAGCTCTGGAGCAGTTGGAAACGCATGGCAGGTTCAATGATGCAGAAGTTTTGGGATTCAACTCTGGCATTAGAGCCAGCAGAAGATTATGAGGATT

Ace file of the UniGene uagpf_v2_unigene45914

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1151	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] ref\|NP_001190074.1\| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] emb\|CAB86899.1\| putative protein [Arabidopsis thaliana] gb\|AEE79016.1\|	-	-	62%
FL-Next	sp=CBS domain-containing protein CBSCBSPB2; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	78%
Blast2go	catalytic activity	GO:0003824	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Apoptosis regulator, Bcl-2, BH	IPR000712	-	-
Sma3	Cytochrome c, class IA/ IB	IPR002327	-	-
Sma3	Cytochrome c, class I	IPR003088	-	-
Sma3	Cytochrome c domain	IPR009056	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SJQ5

Fln msg: Separated hits, possible frame ERROR between 149 and 152, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 153 aas, your sequence is shorter than subject: 74 - 536

Fln protein: S*PWLSLNDGKFLHLPVVDRDGFVVACIDVLQITHAAMATVGSSGAVGxxMAGSMMQKFWDSTLALEPAEDYED

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATGGCAAATTCTTACACCTGCCAGTTGTGGATAGAGATGGATTTGTTGTGGCCTGTATAGACGTGTTGCAAATTACCCATGCAGCAATGGCCACTGTGGGAAGCTCTGGAGCAGTTGGAAAxxxCATGGCAGGTTCAATGATGCAGAAGTTTTGGGATTCAACTCTGGCATTAGAGCCAGCAGAAGATTATGAGGATT

Fln Alignment:

uagpf_mira_rep_c46555___LNDGKFLHLPVVDRDGFVVACIDVLQITHAAMATV--GSSGAVGNxMAGSMMQKFWDSTLALEPAEDYE
Q9SJQ5________________MHDGKFLHLPVFDKDGFAVACLDVLQITHAAISTVENNSSGAVNDxMANTMMQKFWDSALALEPPEDYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain