SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45885

Length: 230 nt

UniGene Fasta

>uagpf_v2_unigene45885
CGTCGTGACCTTGGCTGTCACTCATTCTAGTCACAGCTTTACATGTGAAAGGGACGGTGTCAAACATAAATGTCCTTGGTATTATTGAAGTTCAGGATCTTCTTGTTGCAGGAGGTGCTTTGGCTCCTAGAACGGCTCATGAATTGATAGCAAACTTAGCTTGTCGTCTTGCAAGATGGGATGATAGGTTGTTCCGTAAGTATATTTTTGGGGAAGCAGATGAGGTGGAG

Ace file of the UniGene uagpf_v2_unigene45885

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7178	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	WS02772.CR_N10 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02772_N10 3', mRNA sequence.	-	-	90%
FL-Next	tr=At2g42950; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	magnesium transporter -like family protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	88%
Blast2go	transmembrane transport	GO:0055085	Biological Process	88%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	88%
Blast2go	endomembrane system	GO:0012505	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8GY73

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 227 aas, your sequence is shorter than subject: 76 - 501

Fln protein: S*PWLSLILVTALHVKGTVSNINVLGIIEVQDLLVAGGALAPRTAHELIANLACRLARWDDRLFRKYIFGEADEVE

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAGTCACAGCTTTACATGTGAAAGGGACGGTGTCAAACATAAATGTCCTTGGTATTATTGAAGTTCAGGATCTTCTTGTTGCAGGAGGTGCTTTGGCTCCTAGAACGGCTCATGAATTGATAGCAAACTTAGCTTGTCGTCTTGCAAGATGGGATGATAGGTTGTTCCGTAAGTATATTTTTGGGGAAGCAGATGAGGTGGAG

Fln Alignment:

uagpf_mira_rep_c46521___LVTALHVKGTVSNINVLGIIEVQDLLVAGGALAPRTAHELIANLACRLARWDDRLFRKYIFGEADEVE
Q8GY73________________LVTALHVKGFALNISVLGITEVQEMLIAGGACIPRTVHELIAHLACRLARWDDRLFRKYIFGAADEVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain