SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45663

Length: 427 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene45663
TCTATATTCATGACAAAAGGGCTGAACAGAATGATCAGATATGTTAAAGTAGTGGGTAAGGTTAAAGGTCTCCAACTTTCTGAAGAGGGTCGGGCTTTAACACATTAACAATTTGTTGATGATACCATGTTTCCGGGAATCCCCATGGTCAAAGAAGCTTTATAATATAAGCAAATCCTGAGAGACTTTTCCATGGATTTAGGCATGGAGGTAAATCTCTCAAAATCTAAGATTTTTTTCTTTAATACTCACATTTCTATTTAAAGGAATATAGCCAGAATTTTTGGCTTTCAAAGGGAGCTCCTCCCCTAAAAATATTTCGGAGTTCCTCTTACAGCAAAACCTTTACACAAGAGCATATGGGAACCAGTAATTAACAAATTGCAAGACAAGGTCAGGAAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene45663 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72461	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RVT_1 domain containing protein	-	-	3.0e-05	25%
FL-Next	tr=Putative uncharacterized protein; Beta vulgaris subsp. vulgaris.	-	-	0.0	28%
Blast2go	ribonuclease h protein at1g65750-like	-	-	1.13963e-09	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4NCK1

Fln msg: Distance to subject end: 599 aas, your sequence is shorter than subject: 142 - 1381

Fln protein: SIFMTKGLNRMIRYVKVVGKVKGLQLSEEGRALTH*QFVDDTMFPGIPMVKEAL*YKQILRDFSMDLGMEVNLSKSKIFFFNTHISI*RNIARIFGFQRELLP*KYFGVPLTAKPLHKSIWEPVINKLQDKVRKLSDSQGHD

Protein Length: 143

Fln nts: TCTATATTCATGACAAAAGGGCTGAACAGAATGATCAGATATGTTAAAGTAGTGGGTAAGGTTAAAGGTCTCCAACTTTCTGAAGAGGGTCGGGCTTTAACACATTAACAATTTGTTGATGATACCATGTTTCCGGGAATCCCCATGGTCAAAGAAGCTTTATAATATAAGCAAATCCTGAGAGACTTTTCCATGGATTTAGGCATGGAGGTAAATCTCTCAAAATCTAAGATTTTTTTCTTTAATACTCACATTTCTATTTAAAGGAATATAGCCAGAATTTTTGGCTTTCAAAGGGAGCTCCTCCCCTAAAAATATTTCGGAGTTCCTCTTACAGCAAAACCTTTACACAAGAGCATATGGGAACCAGTAATTAACAAATTGCAAGACAAGGTCAGGAAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c46185___LNRMIRYXXXXXXXXGLQLSEEGRALTH*QFVDDTMFPGIPMVKEAL*YKQILRDFSMDLGMEVNLSKSKIFFFNTHISI*RNIARIFGFQRELLP*KYFGVPLTAKPLHKSIWEPVINKLQDKV
F4NCK1________________LNLLIKKAVSLKLWDGIETCRNGLRITHLQYADDTIIFCPPKLEFLSNIKKTLILFQLASGLQVNFHKSSLLGVNVHENLLNDFAKHLLCKVGKLPFTYLGLPIGGNITRLSLWDPVISKLEKKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain