SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45618

Length: 397 nt

UniGene Fasta

>uagpf_v2_unigene45618
CGTCGTGACCTTGGCTGTCACTCAGTCTGGCAAGAGACCTGTAATCTAATAAAGTCAACAGCTGCTGCTCGAAGTCCACTACTTCGTAAATTGCTGATCAAGTTAACGCAGCGTGTTGGGCTAGCATACCTGCCTCAACGAGTTCCTTTGTGGCGCTATGTGGGAAGGAACAGCTTGCTGGGAGAAAATCTTTCATCTGCAGCTCCCAGTACAAACCATGAAAATGAATCAAGGAAAGAATTGGATTCAACTATAAATGTAGAAAATGGTGAAGCACAAGAAGAAATTGATGTGCCAGAGGTCATTGAGGAAATAATTGAACAATTATTATCTGGTTTAAGGGATAAGGACACTGTTGTTCGATGGTCAGCAGCAAAGGGTATTGGACGAGTTACAG

Ace file of the UniGene uagpf_v2_unigene45618

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene55179	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tubulin-folding cofactor [Oryza sativa Japonica Group]	-	-	3.0e-27	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	57%
Blast2go	tubulin-specific chaperone d-like	-	-	7.50295e-36	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	7.50295e-36	66%
Blast2go	cytokinesis	GO:0000910	Biological Process	7.50295e-36	66%
Blast2go	microtubule-based process	GO:0007017	Biological Process	7.50295e-36	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I392

Fln msg: Distance to subject end: 848 aas, your sequence is shorter than subject: 132 - 1269

Fln protein: RRDLGCHSVWQETCNLIKSTAAARSPLLRKLLIKLTQRVGLAYLPQRVPLWRYVGRNSLLGENLSSAAPSTNHENESRKELDSTINVENGEAQEEIDVPEVIEEIIEQLLSGLRDKDTVVRWSAAKGIGRVT

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTGGCAAGAGACCTGTAATCTAATAAAGTCAACAGCTGCTGCTCGAAGTCCACTACTTCGTAAATTGCTGATCAAGTTAACGCAGCGTGTTGGGCTAGCATACCTGCCTCAACGAGTTCCTTTGTGGCGCTATGTGGGAAGGAACAGCTTGCTGGGAGAAAATCTTTCATCTGCAGCTCCCAGTACAAACCATGAAAATGAATCAAGGAAAGAATTGGATTCAACTATAAATGTAGAAAATGGTGAAGCACAAGAAGAAATTGATGTGCCAGAGGTCATTGAGGAAATAATTGAACAATTATTATCTGGTTTAAGGGATAAGGACACTGTTGTTCGATGGTCAGCAGCAAAGGGTATTGGACGAGTTACAG

Fln Alignment:

uagpf_mira_rep_c46120___VWQETCNLIKSTAAARSPLLRKLLIKLTQRVGLAYLPQRVPLWRYVGRNSLLGENLS-SAAPSTNHENESRKELDSTINVENG---EAQXXXXXXXXXXXXXXQLLSGLRDKDTVVRWSAAKGIGRVT
F6I392________________VWNDISILMKSSTAARSPLLRKYLVKLTQRIGLTCLPYRSPSWRYVGKTSSLGENISVNASGKCNH----GVDMDSPSQGENSSFLQDEEDMDVPDIVEEIIEMLLTGLKDTDTVVRWSAAKGIGRIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain