UniGene Name: uagpf_v2_unigene45606
Length: 229 nt
UniGene Fasta |
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>uagpf_v2_unigene45606
C |
Ace file of the UniGene uagpf_v2_unigene45606 |
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Annotations |
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Parent Assembly | Parent UniGene | Reads (related/total) |
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SustainPine v2.0 | sp_v2.0_unigene8756 | 2/2 |
Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO | - | - | 0.0 | 47% |
Blast2go | atp-dependent helicase brm-like | - | - | 0.0 | 59% |
Source | GOs | Term | Type | e value | Identity |
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Blast2go | regulation of gene expression, epigenetic | GO:0040029 | Biological Process | 0.0 | 59% |
Blast2go | organ boundary specification between lateral organs and the meristem | GO:0010199 | Biological Process | 0.0 | 59% |
Blast2go | DNA binding | GO:0003677 | Molecular Function | 0.0 | 59% |
Blast2go | catalytic activity | GO:0003824 | Molecular Function | 0.0 | 59% |
Blast2go | cytosol | GO:0005829 | Cellular Component | 0.0 | 59% |
Blast2go | chromatin remodeling complex | GO:0016585 | Cellular Component | 0.0 | 59% |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | SNF2-related | IPR000330 | - | 0.0 | - |
Sma3 | Chromo domain/shadow | IPR000953 | - | 0.0 | - |
Sma3 | SANT/Myb domain | IPR001005 | - | 0.0 | - |
Sma3 | Bromodomain | IPR001487 | - | 0.0 | - |
Sma3 | Helicase, C-terminal | IPR001650 | - | 0.0 | - |
Sma3 | Zinc finger, RING-type | IPR001841 | - | 0.0 | - |
Sma3 | Zinc finger, PHD-type | IPR001965 | - | 0.0 | - |
Sma3 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | IPR002464 | - | 0.0 | - |
Sma3 | HSA | IPR006562 | - | 0.0 | - |
Sma3 | Agenet | IPR008395 | - | 0.0 | - |
Sma3 | Domain of unknown function DUF1086 | IPR009462 | - | 0.0 | - |
Sma3 | Domain of unknown function DUF1087 | IPR009463 | - | 0.0 | - |
Sma3 | IPR012287 | - | 0.0 | - | |
Sma3 | Vps54-like | IPR012501 | - | 0.0 | - |
Sma3 | HAS subgroup | IPR013999 | - | 0.0 | - |
Sma3 | Helicase, superfamily 1/2, ATP-binding domain | IPR014001 | - | 0.0 | - |
Sma3 | Helicase/SANT-associated, DNA binding | IPR014012 | - | 0.0 | - |
Sma3 | IPR014021 | - | 0.0 | - | |
Sma3 | IPR014778 | - | 0.0 | - | |
Sma3 | Glutamine-Leucine-Glutamine, QLQ | IPR014978 | - | 0.0 | - |
Sma3 | ATPase, nucleosome remodelling ISWI, HAND domain | IPR015194 | - | 0.0 | - |
Sma3 | SLIDE domain | IPR015195 | - | 0.0 | - |
Sma3 | Aldehyde dehydrogenase, conserved site | IPR016160 | - | 0.0 | - |
Sma3 | Myb-like domain | IPR017877 | - | 0.0 | - |
Sma3 | SANT domain | IPR017884 | - | 0.0 | - |
Sma3 | Zinc finger, RING-type, conserved site | IPR017907 | - | 0.0 | - |
Sma3 | AT hook, DNA-binding motif | IPR017956 | - | 0.0 | - |
Sma3 | Bromodomain, conserved site | IPR018359 | - | 0.0 | - |
Sma3 | Isocitrate lyase/phosphorylmutase, conserved site | IPR018523 | - | 0.0 | - |
Full-Lengther Next Prediction |
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Fln status: Coding
Fln database: testcode
Fln msg:
Test code: 1
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain