SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45552

Length: 245 nt

UniGene Fasta

>uagpf_v2_unigene45552
CGTCGTGACCTTGGCTGTCACTCATTTTCTATGTGTGTTCACAAAAAGCGTGCTCTTCTATTTGGAGGTGTGGTGGATATGGAGGTTCAAGGTGATGTTCTTCACAGTTTGTTCTTGAATGAGCTTTATGGTTTCCAGTTGGACAATCAGCGCTGGTACCCTTTGGAGTTACGGAAGGGGAAAGCAACTAAAGATAAGACACGGGATCAGGCAAAGATGGCACTACAATCTGGAGGACCGTCTAC

Ace file of the UniGene uagpf_v2_unigene45552

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7558	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kelch repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RAN1_RICCO	-	-	56%
FL-Next	tr=cDNA clone:J033075M04, full insert sequence; Oryza sativa subsp. japonica (Rice).	-	-	78%
Blast2go	kelch repeat-containing protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B7EMV7

Fln msg: Distance to subject end: 205 aas, your sequence is shorter than subject: 81 - 338

Fln protein: RRDLGCHSFSMCVHKKRALLFGGVVDMEVQGDVLHSLFLNELYGFQLDNQRWYPLELRKGKATKDKTRDQAKMALQSGGPS

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTATGTGTGTTCACAAAAAGCGTGCTCTTCTATTTGGAGGTGTGGTGGATATGGAGGTTCAAGGTGATGTTCTTCACAGTTTGTTCTTGAATGAGCTTTATGGTTTCCAGTTGGACAATCAGCGCTGGTACCCTTTGGAGTTACGGAAGGGGAAAGCAACTAAAGATAAGACACGGGATCAGGCAAAGATGGCACTACAATCTGGAGGACCGTCTAC

Fln Alignment:

uagpf_mira_rep_c46025___FSMCVHKKRALLFGGVVDMEVQGDVLHSLFLNELYGFQLDNQRWYPLELRKGKATKDKTRD
B7EMV7________________FSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGFQLDNHRWYPLELRKDKPAKNKTKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain