SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45431

Length: 333 nt

UniGene Fasta

>uagpf_v2_unigene45431
CGTCGTGACCTTGGCTGTCACTCAATGTCAGTGAAAAGGAAGGTGATGGAAGAGCTCACTGTAGCCACCTTGATAAGCTTAATTCATGATCCTGAAGAGGTGGTCCAAGAGCAAGCACTGGCATTTGTTCGTAACCTGGTGTATGGAAGTGTTGAATCTGTTCAACAAATTTTTGTTGAAGATGGACTAATTCTTAGAGCTGTGGTGCAACAATTACAAGTTGCAACAGGACCAGAAGTTTGCACACAGGGGCTTTATGTGCTTTGCAATGTTGCAGCAGGGAATGAGTTCCACAAGGATGAAGTCATGCATTTGTTGTAGCATCTTTGCAAG

Ace file of the UniGene uagpf_v2_unigene45431

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7853	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb\|AAM13139.1\| unknown protein [Arabidopsis thaliana] gb\|AAP37775.1\| At1g51350 [Arabidopsis thaliana] gb\|AEE32654.1\| armadillo/beta-catenin-like repeats-containing protein [Arab	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	74%
Blast2go	armadillo repeat-containing protein 8-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R6B9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 407 aas, your sequence is shorter than subject: 107 - 919

Fln protein: RRDLGCHSMSVKRKVMEELTVATLISLIHDPEEVVQEQALAFVRNLVYGSVESVQQIFVEDGLILRAVVQQLQVATGPEVCTQGLYVLCNVAAGNEFHKDEVMHLL*

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTCAGTGAAAAGGAAGGTGATGGAAGAGCTCACTGTAGCCACCTTGATAAGCTTAATTCATGATCCTGAAGAGGTGGTCCAAGAGCAAGCACTGGCATTTGTTCGTAACCTGGTGTATGGAAGTGTTGAATCTGTTCAACAAATTTTTGTTGAAGATGGACTAATTCTTAGAGCTGTGGTGCAACAATTACAAGTTGCAACAGGACCAGAAGTTTGCACACAGGGGCTTTATGTGCTTTGCAATGTTGCAGCAGGGAATGAGTTCCACAAGGATGAAGTCATGCATTTGTTGTAGCATCTTTGCAAG

Fln Alignment:

uagpf_mira_rep_c45844___MSVKRKVMEELTVATLISLIHDPEEVVQEQALAFVRNLVYGSVESVQQIFVEDGLILRAVVQQLQVATGPEVCTQGLYVLCNVAAGNEFHKDEVM
D8R6B9________________MSVKEKVMRELTVSTLVDLVCDSEEMVQEQALAFVRNLVYGSVASVQQIFAADAAILHAVERQLCVATRPEICTQALYVLSNVAAGNEYHKDAVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain