SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45383

Length: 326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene45383
GGAGATTGTAAGGTTACACGGGTTACCTAAGAGCATTGTTTCTGATAGAGATACCAGATTTGTTGGTCATTTTTGGAGGACCTTGTGGACGAAACTTGGTACTAAATTGAGTTTCAGTTCAACTTATCAACGTCAGACTGAAGTTGTAAACAAAAGCTTGGGTAATCTTCAGAGAAGTCTTGCAGGTGAACATCTAAAACAGTGGGATCAAATTTTGGCATAATATGAATATGCTTATAATGATTCTCCTAACATGAGTACAGGACAAAGTCCATTCCATATAGTTTATGGGTTGCACCCAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene45383 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73381	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD4_SILLA	-	-	2.0e-26	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Blast2go	gag-pol polyprotein	-	-	1.74756e-34	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.74756e-34	73%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Auxin efflux carrier	IPR004776	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BUF4

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 108 - 354

Fln protein: EIVRLHGLPKSIVSDRDTRFVGHFWRTLWTKLGTKLSFSSTYQRQTEVVNKSLGNLQRSLAGEHLKQWDQILA*YEYAYNDSPNMSTGQSPFHIVYGLHPMSDSQGHD

Protein Length: 109

Fln nts: GGAGATTGTAAGGTTACACGGGTTACCTAAGAGCATTGTTTCTGATAGAGATACCAGATTTGTTGGTCATTTTTGGAGGACCTTGTGGACGAAACTTGGTACTAAATTGAGTTTCAGTTCAACTTATCAACGTCAGACTGAAGTTGTAAACAAAAGCTTGGGTAATCTTCAGAGAAGTCTTGCAGGTGAACATCTAAAACAGTGGGATCAAATTTTGGCATAATATGAATATGCTTATAATGATTCTCCTAACATGAGTACAGGACAAAGTCCATTCCATATAGTTTATGGGTTGCACCCAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c45773___EIVRLHGLPKSIVSDRDTRFVGHFWRTLWTKLGTKLSFSSTYQRQT----EVVNKSLGNLQRSLAGEHLKQWDQILA*YEYAYNDSPNMSTGQSPFHIVYGLHP
A5BUF4________________EVVRLHGLPQSIVSDRDVKFMSYFWKTLWAKLGTQLKFSSSFHPQTDGQIEVVNRSLGNLLRCIVRDQLRNWDNVLPQAEFAFNSSTNRTTGYSPFEVAYGLKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain