SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45368

Length: 409 nt

UniGene Fasta

>uagpf_v2_unigene45368
CGTCGTGACCTTGGCTGTCACTCAATGGTATAGTGCACAACTGATTGCTCATGGAGATCGCATTCTTTCTCTAGCTGCAAGTATTTTCCTGGAGGATGAGGTAATAGTATCTGGAAAGCTTCCAGCAGTTCATTGGTGGCATAAAACGAAGTCACATGCAGCAGAAGTCACGGCTGGATTCTATAATGTAGAAGGTCGTGATGGGTATGATGCCTTCATGGAGATGTTTGCCAAAAACGCATCTTTAGTGATTTTGCCAAGCATGGATGTTTCAGAAATGTACTATCCTGCTGAAGCAAGATGTAGTCCAGAGTCAGTTTTCCTTCAGATTCGAAGAGCGAGTCATAAACATGGCGTGCCAGTTGCAGGCGAGAATTCATTTCCCTGCCATGACAATGCTGCTTTTAAG

Ace file of the UniGene uagpf_v2_unigene45368

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2000	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase (Fragment) n=1 Tax=Prunus armeniaca RepID=Q9XH69_PRUAR	-	-	51%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	64%
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 136 - 492

Fln protein: VVTLAVTQWYSAQLIAHGDRILSLAASIFLEDEVIVSGKLPAVHWWHKTKSHAAEVTAGFYNVEGRDGYDAFMEMFAKNASLVILPSMDVSEMYYPAEARCSPESVFLQIRRASHKHGVPVAGENSFPCHDNAAFK

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTATAGTGCACAACTGATTGCTCATGGAGATCGCATTCTTTCTCTAGCTGCAAGTATTTTCCTGGAGGATGAGGTAATAGTATCTGGAAAGCTTCCAGCAGTTCATTGGTGGCATAAAACGAAGTCACATGCAGCAGAAGTCACGGCTGGATTCTATAATGTAGAAGGTCGTGATGGGTATGATGCCTTCATGGAGATGTTTGCCAAAAACGCATCTTTAGTGATTTTGCCAAGCATGGATGTTTCAGAAATGTACTATCCTGCTGAAGCAAGATGTAGTCCAGAGTCAGTTTTCCTTCAGATTCGAAGAGCGAGTCATAAACATGGCGTGCCAGTTGCAGGCGAGAATTCATTTCCCTGCCATGACAATGCTGCTTTTAAG

Fln Alignment:

uagpf_mira_rep_c45748___QWYSAQLIAHGDRILSLAASIFLEDEVIVSGKLPAVHWWHKTKSHAAEVTAGFYNVEGRDGYDAFMEMFAKNASLVILPSMDVSEMYYPAEARCSPESVFLQIRRASHKHGVPVAGENSFPCHDNAAF
A9NVE4________________QWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAY

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
42			33	66	0.997461
43			66	33	0.997461
44	66	33			0.997461
45			33	66	0.997461
48	33	66			0.997461
49		33		66	0.997461
51	66			33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain