SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45254

Length: 188 nt

UniGene Fasta

>uagpf_v2_unigene45254
CGTCGTGACCTTGGCTGTCACTCAATCATCAGCTATCATGGCTTCCATTAACAGTAATGTGATATTAATTGCTGTTCTTGGTTTTTCATATGCTACTTATCTTTGGCTGGTGCAAGTACTTATGCAGAGCAGGAACAGTATTCGTCTGTGGTGGTTGTGGGAAAAGTGTTCTGTGATACATGTTTGGA

Ace file of the UniGene uagpf_v2_unigene45254

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7657	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen Ole e 1 allergen and extensin [Medicago truncatula]	-	-	1.0e-13	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	pollen ole e 1 allergen and extensin family protein	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTE0

Fln msg: Distance to subject end: 259 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 43 - 310

Fln protein: CDINCCSWFFICYLSLAGASTYAEQEQYSSVVVVGKVFCDTCL

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATCAGCTATCATGGCTTCCATTAACAGTA_-_ATGTGATATTAATTGCTGTTCTTGGTTTTTCATATGCTACTTATCTTTGGCTGGTGCAAGTACTTATGCAGAGCAGGAACAGTATTCGTCTGTGGTGGTTGTGGGAAAAGTGTTCTGTGATACATGTTTGGA

Fln Alignment:

uagpf_mira_rep_c45584___FFICYLSLAGASTYAEQEQYSSVVVVGKVFCDTCL
C0PTE0________________FFLCCLSLVGASTFAGQEKDSSVVVVGKVFCDTCL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain