SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene45225

Length: 424 nt

UniGene Fasta

>uagpf_v2_unigene45225
CGTCGTGACCTTGGCTGTCACTCAAGTTCAATAAGTTCTACACACTCTTCAGAAAGGGCCACAAGAGAGGAATGGGCCGTTATTTCCATCCAAACTGCTTTTCGTGGCTTCCTGGCAAGGAAAGCCCTTCGTGCTTTGAAAGGATTAGTGAGACTCCAAGCTCTTGTCAGGGGCCATGCAGTGAGGAAGCAAGCGGCTATCACCTTGCGATGCATGCAAGCTTTGGTGAGAGTTCAGGCTCGGGTTCGAGCCCGAAGGGTGCGTATAGCAATAGAGGATCAAATTAGGCAACAGAAAGTTGAGCAGCAACTTAAGCTCGAGGCTCAAATCCGTGAAGCTGAGGAAGGGTGGTGTGACAGCATAGGATCAATGGAACAAATTCATGCTAAGTTACAGCAGAGGCAAGAAGCTGCAATCAAACGGG

Ace file of the UniGene uagpf_v2_unigene45225

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8198	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJ06_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	iq domain-containing protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	71%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	71%
Blast2go	catalytic activity	GO:0003824	Molecular Function	71%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein L34e, conserved site	IPR018065	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS04

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 141 - 395

Fln protein: RRDLGCHSSSISSTHSSERATREEWAVISIQTAFRGFLARKALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIAIEDQIRQQKVEQQLKLEAQIREAEEGWCDSIGSMEQIHAKLQQRQEAAIKR

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCAATAAGTTCTACACACTCTTCAGAAAGGGCCACAAGAGAGGAATGGGCCGTTATTTCCATCCAAACTGCTTTTCGTGGCTTCCTGGCAAGGAAAGCCCTTCGTGCTTTGAAAGGATTAGTGAGACTCCAAGCTCTTGTCAGGGGCCATGCAGTGAGGAAGCAAGCGGCTATCACCTTGCGATGCATGCAAGCTTTGGTGAGAGTTCAGGCTCGGGTTCGAGCCCGAAGGGTGCGTATAGCAATAGAGGATCAAATTAGGCAACAGAAAGTTGAGCAGCAACTTAAGCTCGAGGCTCAAATCCGTGAAGCTGAGGAAGGGTGGTGTGACAGCATAGGATCAATGGAACAAATTCATGCTAAGTTACAGCAGAGGCAAGAAGCTGCAATCAAACGGG

Fln Alignment:

uagpf_mira_rep_c45545___ERATREEWAVISIQTXXXXXXXXXXXXXXXXXXXXQALVRGHAVRKQAAITLRCMXXXXXXXXXXXXXXXXXXXEDQIRQQKVEQQLKLEAQIREAEEGWCDSIGSMEQIHAKLQQRQEAAIKR
B8LS04________________QESARQESAAICIQTAFRGFLARKALRALKGLVRLQALVRGQAVRKQAAITLRCMQALVRVQARVRARRECMAMESQIMQPKLDHQFRLEAQSHDSEVGWCDSLGSVEEVQHKMRQRQEAASKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain