SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44982

Length: 330 nt

UniGene Fasta

>uagpf_v2_unigene44982
CGTCGTGACCTTGGCTGTCACTCAACGACAAACGGAAATAGGCGAGGCAGAAAGAAGAGGGGTTCCAAACTGGCTAGTAGATGGTAACTTGACTATTTCCTCAAATAGGAGTTCCATTCTTAACCAAGAAACTGTACATGCAGACTTTGATCTAGATATCAGTCGTTGGCTAAGGTCTTCACGGGTTGTTCAGTGGTATCCAGGCCATATTGCAAAGGCAGAAAAAGACTAAAACAACAATTAAAACTGATGGATGTTGTTATAGAAGTACGGGATGCAAGGATACCCATGGCCACTGGACATCCAGAGATGGATTCATGGATTGGTGCT

Ace file of the UniGene uagpf_v2_unigene44982

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5529	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein [Arabidopsis thaliana] gb\|AAN12960.1\| unknown protein [Arabidopsis thaliana] gb\|AEE82230.1\| GTP-binding protein [Arabidopsis thaliana]	-	-	1.0e-08	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	39%
Blast2go	gtp-binding protein	-	-	4.06717e-12	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	4.06717e-12	75%
Blast2go	plastid	GO:0009536	Cellular Component	4.06717e-12	75%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	GTPase, MTG1	IPR016478	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H886

Fln msg: Separated hits, possible frame ERROR between 229 and 250, Distance to subject end: 249 aas, your sequence is shorter than subject: 110 - 387

Fln protein: VVTLAVTQRQTEIGEAERRGVPNWLVDGNLTISSNRSSILNQETVHADFDLDISRWLRSSRVVQWYPGHIAKAEKxxxxxxxxMDVVIEVRDARIPMATGHPEMDSWIGA

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGACAAACGGAAATAGGCGAGGCAGAAAGAAGAGGGGTTCCAAACTGGCTAGTAGATGGTAACTTGACTATTTCCTCAAATAGGAGTTCCATTCTTAACCAAGAAACTGTACATGCAGACTTTGATCTAGATATCAGTCGTTGGCTAAGGTCTTCACGGGTTGTTCAGTGGTATCCAGGCCATATTGCAAAGGCAGAAAAAGAxxxxxxxxxxxxxxxxxxxxxGATGGATGTTGTTATAGAAGTACGGGATGCAAGGATACCCATGGCCACTGGACATCCAGAGATGGATTCATGGATTGGTGCT

Fln Alignment:

uagpf_mira_rep_c45172___RGVPNWLVDGNLTISSNRSSILNQETVHADFDLDISRWLRSSRVVQWYPGHIAKAEKDxxxxxxxMDVVIEVRDARIPMATGHPEMDSWIG
B9H886________________KSTPSWQGSGNDVCGGG-----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKExxxxxxxMDVVIEVRDARIPLSTTHPQMDAWLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain