SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44952

Length: 195 nt

UniGene Fasta

>uagpf_v2_unigene44952
CGTCGTGACCTTGGCTGTCACTCAGGTTTGAGAAAGAGGTTGAGCCTTCGTGGCTTGAGAGATGTCCAAACTTTTACCATTCAGCACCGTGTACTTGCATTAAGAACTTTGTGAAGAGCAAGGCTTTTGATTACATTGTTATTTTCATGCTGTTGCTAAATTTGATAACAGTTATCATTGAATCAACGTTAGATG

Ace file of the UniGene uagpf_v2_unigene44952

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene541	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Voltage-dependent calcium channel protein TPC1 n=2 Tax=Andropogoneae RepID=B6SP34_MAIZE	-	-	52%
FL-Next	sp=Two pore calcium channel protein 1; Oryza sativa subsp. japonica (Rice).	-	-	58%
Blast2go	two-pore calcium channel	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	74%
Blast2go	regulation of jasmonic acid biosynthetic process	GO:0080141	Biological Process	74%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	74%
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	74%
Blast2go	regulation of calcium ion transport via voltage-gated calcium channel activity	GO:0051925	Biological Process	74%
Blast2go	voltage-gated calcium channel activity	GO:0005245	Molecular Function	74%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	74%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5QM84

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 278 aas, your sequence is shorter than subject: 64 - 757

Fln protein: S*PWLSLRFEKEVEPSWLERCPNFYHSAPCTCIKNFVKSKAFDYIVIFMLLLNLITVIIESTLD

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGAGAAAGAGGTTGAGCCTTCGTGGCTTGAGAGATGTCCAAACTTTTACCATTCAGCACCGTGTACTTGCATTAAGAACTTTGTGAAGAGCAAGGCTTTTGATTACATTGTTATTTTCATGCTGTTGCTAAATTTGATAACAGTTATCATTGAATCAACGTTAGATG

Fln Alignment:

uagpf_mira_rep_c45128___LSLRFEKEVEPSWLERCPNFYHSAPCTCIKNFVKSKAFDYIVIFMLLLNLITVIIESTLD
Q5QM84________________IAIKFQKEPPPSYLEKYPSFYHSALCEWLKSFVRSPLFEYIVIFVLLMNLVAVIIETTLD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain