SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44940

Length: 190 nt

UniGene Fasta

>uagpf_v2_unigene44940
CGTCGTGACCTTGGCTGTCACTCAAATATTTCCGGCATGGGTTGCAGCGCCGGGATCATAGGAGTGGACATGGCGAAGGATCTGCTGAAAGTTCATAAAAATTCTTATGTCCTTCTGGTTAGCAGCGAGAATCTGACGATGAATCGGTATGTGGGCAACGACAAGCCGATGATGATGTCCAATTGCCTGT

Ace file of the UniGene uagpf_v2_unigene44940

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene44382	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Medicago truncatula RepID=Q2HTC9_MEDTR	-	-	55%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	fatty acid elongase	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD26

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 63 - 486

Fln protein: RRDLGCHSNISGMGCSAGIIGVDMAKDLLKVHKNSYVLLVSSENLTMNRYVGNDKPMMMSNCL

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATTTCCGGCATGGGTTGCAGCGCCGGGATCATAGGAGTGGACATGGCGAAGGATCTGCTGAAAGTTCATAAAAATTCTTATGTCCTTCTGGTTAGCAGCGAGAATCTGACGATGAATCGGTATGTGGGCAACGACAAGCCGATGATGATGTCCAATTGCCTGT

Fln Alignment:

uagpf_mira_rep_c45111___NISGMGCSAGIIGVDMAKDLLKVHKNSYVLLVSSENLTMNRYVGNDKPMMMSNCL
D5AD26________________NLGGMGCSAGIIAVDLARDLLQVHSNTYAIVLSTENITLNWYTGNDRSMLLPNCL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain