SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44932

Length: 183 nt

UniGene Fasta

>uagpf_v2_unigene44932
CGTCGTGACCTTGGCTGTCACTCAGGAAAGATGATCAACATTGTTGAAGGCCTAGAGTTATATGAAAACATCTTTGATAGTTCAGAGCTTTCACGGCTTACTCTGTTTACACAGAAACTTAAAGTTGCAGGAAGGCAGAGAGAACTTAGAGGTCAGACGTTTTTGGTTTTCAAGAGACCAATG

Ace file of the UniGene uagpf_v2_unigene44932

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13388	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T8G4_VITVI	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	hydroxyproline-rich glyco protein	-	-	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLT0

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 61 - 496

Fln protein: RRDLGCHSGKMINIVEGLELYENIFDSSELSRLTLFTQKLKVAGRQRELRGQTFLVFKRPM

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAAAGATGATCAACATTGTTGAAGGCCTAGAGTTATATGAAAACATCTTTGATAGTTCAGAGCTTTCACGGCTTACTCTGTTTACACAGAAACTTAAAGTTGCAGGAAGGCAGAGAGAACTTAGAGGTCAGACGTTTTTGGTTTTCAAGAGACCAATG

Fln Alignment:

uagpf_mira_rep_c45099___SGKMINIVEGLELYENIFDSSELSRLTLFTQKLKVAGRQRELRGQTF
B8LLT0________________NGKPMNILEGLELHTGVFNAAEQRRLVAFIYQLQEQGRKKQLRERTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain