SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44846

Length: 220 nt

UniGene Fasta

>uagpf_v2_unigene44846
CGTCGTGACCTTGGCTGTCACTCAATTCTCCATGAATGCATCGAAGCCATGAAGAAGAAAGATGAAGAGCTTGACAGACAAGGGCAGCAGAGATCCAAGCTGGAAAATTGCAGCTCCATGCTTAGAAGAATGGGGGAGAAATTAGCCTCACCGGTATCCCTCGATGGGTCCAAGGCCAGTTCCCTGTTGTCTGCCATGTATGGAGCGAAGACCGCCACTA

Ace file of the UniGene uagpf_v2_unigene44846

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9636	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF793 multi-domain protein	-	-	2.0e-22	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF677	IPR007749	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV33

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 73 - 366

Fln protein: RRDLGCHSILHECIEAMKKKDEELDRQGQQRSKLENCSSMLRRMGEKLASPVSLDGSKASSLLSAMYGAKTAT

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCCATGAATGCATCGAAGCCATGAAGAAGAAAGATGAAGAGCTTGACAGACAAGGGCAGCAGAGATCCAAGCTGGAAAATTGCAGCTCCATGCTTAGAAGAATGGGGGAGAAATTAGCCTCACCGGTATCCCTCGATGGGTCCAAGGCCAGTTCCCTGTTGTCTGCCATGTATGGAGCGAAGACCGCCACTA

Fln Alignment:

uagpf_mira_rep_c44966___SILHECIEAMKKKDEELDRQGQQRSKLENCSSMLRRMGEKLASPVSLDGSKASSLLSAMYGAKTAT
A9NV33________________NILHECIEAMKKKDEELDRQGQQRSKLENCSSMLRRMGEKLTSPVSLDGSKAGSLLTAMYGAKAAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain