SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44800

Length: 221 nt

UniGene Fasta

>uagpf_v2_unigene44800
CGTCGTGACCTTGGCTGTCACTCATTTCTTCTCGTGGACCTAGCTCTTTGTCTCCGTCAATATTAAAGCCAGATATTGCTGCCCCTGGAGTTAATATCTTAGCGGCGTGGACTCCTGTTTCACCACCATCAGATATGCCTAGGGACAGACGCATTGTCAATTTCAATATGGCATCTGGAACATCCATGTCTTGCCCCCATGTCTCGGGTATAGTAAGTCTT

Ace file of the UniGene uagpf_v2_unigene44800

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene43859	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cucumisin, putative n=1 Tax=Ricinus communis RepID=B9R9K9_RICCO	-	-	4.0e-23	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	2.0844e-27	81%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3		IPR000991	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR011702	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 211 aas, your sequence is shorter than subject: 73 - 772

Fln protein: S*PWLSLISSRGPSSLSPSILKPDIAAPGVNILAAWTPVSPPSDMPRDRRIVNFNMASGTSMSCPHVSGIVSL

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTCTCGTGGACCTAGCTCTTTGTCTCCGTCAATATTAAAGCCAGATATTGCTGCCCCTGGAGTTAATATCTTAGCGGCGTGGACTCCTGTTTCACCACCATCAGATATGCCTAGGGACAGACGCATTGTCAATTTCAATATGGCATCTGGAACATCCATGTCTTGCCCCCATGTCTCGGGTATAGTAAGTCTT

Fln Alignment:

uagpf_mira_rep_c44879___KPDIAAPGVNILAAWTPVSPPSDMPRDRRIVNFNMASGTSMSCPHVSGIVSL
B8LQQ7________________KPDLVAPGVNILAAWTGHTSPTGLISDKRRVDFNIISGTSMSCPHVAGIAAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain