SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44778

Length: 241 nt

UniGene Fasta

>uagpf_v2_unigene44778
CGTCGTGACCTTGGCTGTCACTCATGTGTTCTCACTGAGCATAACAACTACTTTCTATATGCTATGTGCTTTTCTGGGTTATGCAGCTTTTGGGGAAAATGCACCTGGAAACCTTTTGACAGGATTTGGATTCTACGAGCCTTACTGGCTTATTGACTTTGCTAATGTATGCATTGTAGTTCACCTAGTTGCAGCATACCAAGTGTTTTGTCAGCCAATCTTCGCTTGCGTTGAAGATGGT

Ace file of the UniGene uagpf_v2_unigene44778

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30638	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid permease-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z940_PICSI	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	amino acid permease-like protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQN5

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 61 - 197

Fln protein: MLCAFLGYAAFGENAPGNLLTGFGFYEPYWLIDFANVCIVVHLVAAYQVFCQPIFACVEDG

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTTCTCACTGAGCATAACAACTACTTTCTAT_-_ATGCTATGTGCTTTTCTGGGTTATGCAGCTTTTGGGGAAAATGCACCTGGAAACCTTTTGACAGGATTTGGATTCTACGAGCCTTACTGGCTTATTGACTTTGCTAATGTATGCATTGTAGTTCACCTAGTTGCAGCATACCAAGTGTTTTGTCAGCCAATCTTCGCTTGCGTTGAAGATGGT

Fln Alignment:

uagpf_mira_rep_c44845___SLSITTTFYMLCAFLGYAAFGENAPGNLLTGFGFYEPYWLIDFANVCIVVHLVAAYQVFCQPIFACVE
A9NQN5________________SMMITASFYMLCGFLGYAAFGENAPGNLLTGFGFYEPYWLIDFANACLAVHLVAAYQVFCQPIFSLVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain