SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44775

Length: 278 nt

UniGene Fasta

>uagpf_v2_unigene44775
CGTCGTGACCTTGGCTGTCACTCAATTCTTATTGGTGCTGGAGGTGTTGTCAAGCTTTGCGACTTTGGATTTGCAAGAGCTATGTCTTGCAATACAATGGTGCTTCGTTCAATCAAAGGGACCCCGCTTTATATGGCTCCTGAACTAGTACGCGAACAACCATACAATCATACAGCAGATCTATGGTCACTTGGTGTAATCTTATACGAGCTTTATGTTGGTCAACCTCCTTTTTATACGAATTCTGTCTATACGCTTATTCGGCACATTGTTAAGGA

Ace file of the UniGene uagpf_v2_unigene44775

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39078	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	fused [Arabidopsis thaliana]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Phytoene desaturase	IPR014102	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 92 - 319

Fln protein: RRDLGCHSILIGAGGVVKLCDFGFARAMSCNTMVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELYVGQPPFYTNSVYTLIRHIVK

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTATTGGTGCTGGAGGTGTTGTCAAGCTTTGCGACTTTGGATTTGCAAGAGCTATGTCTTGCAATACAATGGTGCTTCGTTCAATCAAAGGGACCCCGCTTTATATGGCTCCTGAACTAGTACGCGAACAACCATACAATCATACAGCAGATCTATGGTCACTTGGTGTAATCTTATACGAGCTTTATGTTGGTCAACCTCCTTTTTATACGAATTCTGTCTATACGCTTATTCGGCACATTGTTAAGGA

Fln Alignment:

uagpf_mira_rep_c44841___RDLGCHSILIGAGGVVKLCDFGFARAMSCNTMVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELYVGQPPF
D5A8V0________________RDLKSPNLLVDKTWTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELITLQQPW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain