SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44746

Length: 177 nt

UniGene Fasta

>uagpf_v2_unigene44746
CGTCGTGACCTTGGCTGTCACTCATGTTGCAGTGTGGGGATCGATTGTTGCCACATGGATCTGCCTTATTATCTTGGATTCCATCCCAGTTTTACCAAGTTATGGGACAATATACCATGTAATTACAAGGGATCGTATTGGCTGTGCCTTATTCTTACAGTGATCTTGGCACTGCTT

Ace file of the UniGene uagpf_v2_unigene44746

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1324	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATPase [Arabidopsis thaliana]	-	-	49%
FL-Next	sp=Phospholipid-transporting ATPase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	phospholipid-transporting atpase 1-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	78%
Blast2go	phospholipid transport	GO:0015914	Biological Process	78%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	78%
Blast2go	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P98204

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, your sequence is shorter than subject: 54 - 1158

Fln protein: VVTLAVTHVAVWGSIVATWICLIILDSIPVLPSYGTIYHVITRDRIGCALFLQ*

Protein Length: 55

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGCAGTGTGGGGATCGATTGTTGCCACATGGATCTGCCTTATTATCTTGGATTCCATCCCAGTTTTACCAAGTTATGGGACAATATACCATGTAATTACAAGGGATCGTATTGGCTGTGCCTTATTCTTACAGTGATCTTGGCACTGCTT

Fln Alignment:

uagpf_mira_rep_c44799___VTHVAVWGSIVATWICLIILDSIPVLPSYGTIYHV
P98204________________ITHAAIWGSIVAACICVIVIDVIPTLPGYWAIFQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain