SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44559

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene44559
CGTCGTGACCTTGGCTGTCACTCAATTTTTTGCTGGTGTCTTCCAAGCAGCTTTGGGTATTTTCAGGCTAGGTTTCATCATAGACCTCCTTTCCCATGCAACTATTGAAGGGTACATGACGGGTTCAGCGATTATTGTATCCCTCCAACAGCTCAAAGGAATCCTTGGACTGGAGAAATTTACTGAAGAGACCGACATAATTTCTGTCATCACCTCAGCAACCAAACA

Ace file of the UniGene uagpf_v2_unigene44559

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4125	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sulfate/bicarbonate/oxalate exchanger and transporter sat-1 n=3 Tax=Populus RepID=B9HUR7_POPTR	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	sulfate bicarbonate oxalate exchanger and transporter sat-1	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	sulfate transport	GO:0008272	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3		IPR002917	-	-
Sma3	tRNA modification GTPase TrmE	IPR004520	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	GTP-binding protein TrmE, N-terminal	IPR018948	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1C0

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 75 - 251

Fln protein: VVTLAVTQFFAGVFQAALGIFRLGFIIDLLSHATIEGYMTGSAIIVSLQQLKGILGLEKFTEETDIISVITSATK

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGCTGGTGTCTTCCAAGCAGCTTTGGGTATTTTCAGGCTAGGTTTCATCATAGACCTCCTTTCCCATGCAACTATTGAAGGGTACATGACGGGTTCAGCGATTATTGTATCCCTCCAACAGCTCAAAGGAATCCTTGGACTGGAGAAATTTACTGAAGAGACCGACATAATTTCTGTCATCACCTCAGCAACCAAACA

Fln Alignment:

uagpf_mira_rep_c44497___VTLAVTQ-FFAGVFQAALGIFRLGFIIDLLSHATIEGYMTGSAIIVSLQQLKGILGLEKFTEETDIISVITSATK
A9P1C0________________VRLAMTATFFAGVFQASLGIFRLGFIVDLLSHATIVGFMAGVATIVSLQQLKGILGLRHFTAKTDIVSIVRSVSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain