SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44501

Length: 395 nt

UniGene Fasta

>uagpf_v2_unigene44501
CGTGTGACCTTGGCTGTCACTCATGGTTTGGTTGGGCGGAGTACTTTATTAGATGTCCCACCAATTCTGCCTACAGATAACAGACGAGTAAATGTGGGTCAAATGCAAGACCATGCTTTTCATATGGATGTTCATCGATTTCCAGTGAAGGAAGATGTGCCGATAAAGATAGCTTCTGTATCAAAAACTCCAAATTCACTTATGGAGCCTTTGCTTGAGAAAACAGGTATTCCAGAAAGAAATACTGCACCTAATGTCAGAAGAGATTCTAGGAGACCAGAATCTTCTATTGCTAAATCTGAACAGACTGCAAACCATGGCAGCCAACTCCAAAGTCTCTCACCAGTACAAGTGCCGCTAACTGAGAAGCGGCTGCGAGAGAAGTCTGATATGGC

Ace file of the UniGene uagpf_v2_unigene44501

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2471	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	translation initiation factor eif-4f	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA metabolic process	GO:0016070	Biological Process	0.0	55%
Blast2go	binding	GO:0005488	Molecular Function	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	0.0	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC81

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 131 - 395

Fln protein: RVTLAVTHGLVGRSTLLDVPPILPTDNRRVNVGQMQDHAFHMDVHRFPVKEDVPIKIASVSKTPNSLMEPLLEKTGIPERNTAPNVRRDSRRPESSIAKSEQTANHGSQLQSLSPVQVPLTEKRLREKSDM

Protein Length: 132

Fln nts: CGTGTGACCTTGGCTGTCACTCATGGTTTGGTTGGGCGGAGTACTTTATTAGATGTCCCACCAATTCTGCCTACAGATAACAGACGAGTAAATGTGGGTCAAATGCAAGACCATGCTTTTCATATGGATGTTCATCGATTTCCAGTGAAGGAAGATGTGCCGATAAAGATAGCTTCTGTATCAAAAACTCCAAATTCACTTATGGAGCCTTTGCTTGAGAAAACAGGTATTCCAGAAAGAAATACTGCACCTAATGTCAGAAGAGATTCTAGGAGACCAGAATCTTCTATTGCTAAATCTGAACAGACTGCAAACCATGGCAGCCAACTCCAAAGTCTCTCACCAGTACAAGTGCCGCTAACTGAGAAGCGGCTGCGAGAGAAGTCTGATATGGC

Fln Alignment:

uagpf_mira_rep_c44411___GRSTLLDVPPILPTDNRRVNVGQMQDHAFHMDVHRFPVKEDVPIKIASVSKTPNSLMEPLLEKTGIPERNTAPNVRRDSRRPESSIAKSEQTANHGSQLQSLSPVQVP---LTEKRLREKSDM
D5AC81________________GRSALADVPPFTSVSNRRTGVGLIS--GCNSDRMPLGMRDDILTRTHGAEK-------PLFAKSCVQERNVLDNDRREFKNSYSSGDKGGKTANAEFQLQEHSSQRIPSSQLTEVQLRKKAEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain