SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44446

Length: 332 nt

UniGene Fasta

>uagpf_v2_unigene44446
CGTCGTGACCTTGACTGTCACTCATGCTCTGTCTGGATCTCTGGAGAATTTAGCTTCTCTGAATAGATTGAAGAACTTAGATCTGAGCCTGAACCAGTTTATTGGCAGCATACCAGCATCACTATTTGGGCTTCACCAGTTGTCAAATGTCTTCCTGCAACGTAACAGATTATCTGGTAAACTCAAAATACAAGCTGGATCAGTAATTAGTATTGACACTATAGATCTGAGTCACAATAATCTGTCAGGGGAACTTTCTCCTATTTTGGCAAATGCTCGGAATATATATTTAAATCACAACCATTTGACAGGAATGGTACCTTTGGAATACG

Ace file of the UniGene uagpf_v2_unigene44446

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72109	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat family protein [Arabidopsis thaliana] gb\|AAC79105.1\| putative leucine-rich repeat protein [Arabidopsis thaliana] emb\|CAB77786.1\| putative leucine-rich repeat protein [Arabidopsis thaliana] gb\|ABE66040.1\| leucine-rich repeat family prot	-	-	1.0e-16	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	receptor-like protein kinase	-	-	2.50038e-21	66%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 325 aas, your sequence is shorter than subject: 110 - 551

Fln protein: VVTLTVTHALSGSLENLASLNRLKNLDLSLNQFIGSIPASLFGLHQLSNVFLQRNRLSGKLKIQAGSVISIDTIDLSHNNLSGELSPILANARNIYLNHNHLTGMVPLEY

Protein Length: 111

Fln nts: CGTCGTGACCTTGACTGTCACTCATGCTCTGTCTGGATCTCTGGAGAATTTAGCTTCTCTGAATAGATTGAAGAACTTAGATCTGAGCCTGAACCAGTTTATTGGCAGCATACCAGCATCACTATTTGGGCTTCACCAGTTGTCAAATGTCTTCCTGCAACGTAACAGATTATCTGGTAAACTCAAAATACAAGCTGGATCAGTAATTAGTATTGACACTATAGATCTGAGTCACAATAATCTGTCAGGGGAACTTTCTCCTATTTTGGCAAATGCTCGGAATATATATTTAAATCACAACCATTTGACAGGAATGGTACCTTTGGAATACG

Fln Alignment:

uagpf_mira_rep_c44333___VVTLTVTHALSGSLEN-LASLNRLKNLDLSLNQFIGSIPASLFGLHQLSNVFLQRNRLSGKLKIQAGSVISIDTIDLSHNNLSGELSPILANAR---NIYLNHNHLTGMVPLEY
B8LRW5________________IISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDLQLHANQLTGHIPWEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain