SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44440

Length: 373 nt

UniGene Fasta

>uagpf_v2_unigene44440
CGTCGTGACCTTGGCTGTCACTCAATTTTGATTATATGGACTATCGAAGCACTAACCAAGCCTCACAAGGTAGGAACTCTGAGCACGGGCGTATGGGGTTCGAAACCCAAAACGCGGATTTCATCTAAAGTAGGTTGAGCTTTAATATCAGCATGATTATGCAGGGGTTAGTACAAGCATTGGACTGACACCATCTCCAATAACACATTTCTCAAGAATAATTGGAAACAAGAATCTATCTGTAGGGGTTGAAGTTTCTTTTTACATTGCATCAGGAAACTTATTGAAATATGATGCAAGCTTGAGTATTTCAAAGCTTTATTGTGTTTCTTCTTTGACATTGTAAGACTTGGTCCTTGCCATTCTTATAACT

Ace file of the UniGene uagpf_v2_unigene44440

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene80189	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	porin [Prunus armeniaca]	-	-	5.0e-13	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	4.37108e-24	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of anion transport	GO:0044070	Biological Process	4.37108e-24	71%
Blast2go	response to bacterium	GO:0009617	Biological Process	4.37108e-24	71%
Blast2go	protein binding	GO:0005515	Molecular Function	4.37108e-24	71%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	4.37108e-24	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.37108e-24	71%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	4.37108e-24	71%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	4.37108e-24	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.37108e-24	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 91 aas, your sequence is shorter than subject: 115 - 276

Fln protein: VVTLAVTQF*LYGLSKH*PSLTR*EL*ARAYGVRNPKRGFHLK*VEL*YQHDYAGVSTSIGLTPSPITHFSRIIGNKNLSVGVEVSFYIASGNLLKYDASLSISKLYCVSSLTL*

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGATTATATGGACTATCGAAGCACTAACCAAGCCTCACAAGGTAGGAACTCTGAGCACGGGCGTATGGGGTTCGAAACCCAAAACGCGGATTTCATCTAAAGTAGGTTGAGCTTTAATATCAGCATGATTATGCAGGGGTTAGTACAAGCATTGGACTGACACCATCTCCAATAACACATTTCTCAAGAATAATTGGAAACAAGAATCTATCTGTAGGGGTTGAAGTTTCTTTTTACATTGCATCAGGAAACTTATTGAAATATGATGCAAGCTTGAGTATTTCAAAGCTTTATTGTGTTTCTTCTTTGACATTGTAAGACTTGGTCCTTGCCATTCTTATAACT

Fln Alignment:

uagpf_mira_rep_c44325___VEL*YQHDYAGVSTSIGLTPSPITHFSRIIGNKNLSVGVEVSFYIASGNLLKYDASLSISKLYCVSSLTL
A9NU89________________VELQYLHDYAGVSTSIGLTPSPITHFSGVIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain