SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44434

Length: 159 nt

UniGene Fasta

>uagpf_v2_unigene44434
CGTCGTGACCTTGGCTGTCACTCAAAGGTTATTGAAATAGGCATGCAAAAATGGAGTGGTCAATATGGTCGTCCTTTTCTTTTTGCAATACTGAGTGATGGGACAATCCTATGTTATCATGCATATTTTTATGAAGGACAAGATTAATATAATTAAGAT

Ace file of the UniGene uagpf_v2_unigene44434

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene46468	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana]	-	-	2.0e-35	54%
FL-Next	sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%
Blast2go	cleavage and polyadenylation specificity factor	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	65%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FGR0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 554 aas, your sequence is shorter than subject: 49 - 1442

Fln protein: RRDLGCHSKVIEIGMQKWSGQYGRPFLFAILSDGTILCYHAYFYEGQD*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGTTATTGAAATAGGCATGCAAAAATGGAGTGGTCAATATGGTCGTCCTTTTCTTTTTGCAATACTGAGTGATGGGACAATCCTATGTTATCATGCATATTTTTATGAAGGACAAGATTAATATAATTAAGAT

Fln Alignment:

uagpf_mira_rep_c44317___HSKVIEIGMQKWSGQYGRPFLFAILSDGTILCYHAYFYEGQD
Q9FGR0________________NTRVVELAMQRWSGHHTRPFLFAVLADGTILCYHAYLFDGVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain