SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44428

Length: 450 nt

UniGene Fasta

>uagpf_v2_unigene44428
CGTCGTGACCTTGGCTGTCACTCATTTTTGTTCCGGTTTGATATTTTAGCAGTGGATTTCATCGAAATCCTGCAATGTTAGGAAGTCTTCTGGCACTATGTTTGGTTAGAAATCGTTTGTCATCGACTCACAGTTTAAAAAAAGCCAATGCACATGGATTTGGTCGCGGGTTCGACTCCATCTATCCCATTCTAGTATTCCGTCATCGACTTGTGGACGATTGGAGCAATGTCGGAACATGGGAGGCGGACCGAGGACGTTCCCGGGAGGGCTCAGCAAATGGCAATGGAAGAGATTGCACGAGAAGAAGGCCAGACAGAAAGAAAAAACGCTCTTGCAGCAAGATAGGCAGGTTTACTTGGCCCGAATCAGGTCCCAGCTTAGAGGTAAGATATTTGAAACGATGATGATAACACTCGCAATATTAACGTCGCCAAGCAAGATCCTTCA

Ace file of the UniGene uagpf_v2_unigene44428

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20416	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable DEAD-box ATP-dependent RNA helicase 48 n=3 Tax=Arabidopsis RepID=RH48_ARATH	-	-	7.0e-32	63%
FL-Next	sp=Probable DEAD-box ATP-dependent RNA helicase 48; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Blast2go	protein	-	-	1.40933e-36	68%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9C8S9

Fln msg: Distance to subject end: 702 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 113 - 798

Fln protein: KSFVIDSQFKKSQCTWIWSRVRLHLSHSSIPSSTCGRLEQCRNMGGGPRTFPGGLSKWQWKRLHEKKARQKEKTLLQQDRQVYLARIRSQLRGKIFETMMITLAILTSPSKIL

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGTTCCGGTTTGATATTTTAGCAGTGGATTTCATCGAAATCCTGCAATGTTAGGAAGTCTTCTGGCACTATGTTTGGTTAGAAATCGTTTGTCATCGACTCACAGTTTAAAAAAAGCCAATGCACATGGATTTGGTCGCGGGTTCGACTCCATCTATCCCATTCTAGTATTCCGTCATCGACTTGTGGACGATTGGAGCAATGTCGGAACATGGGAGGCGGACCGAGGACGTTCCCGGGAGGGCTCAGCAAATGGCAATGGAAGAGATTGCACGAGAAGAAGGCCAGACAGAAAGAAAAAACGCTCTTGCAGCAAGATAGGCAGGTTTACTTGGCCCGAATCAGGTCCCAGCTTAGAGGTAAGATATTTGAAACGATGATGATAACACTCGCAATATTAACGTCGCCAAGCAAGATCCTTCA

Fln Alignment:

uagpf_mira_rep_c44307___SIPSSTCGRLEQCRNMGGGPRTFPGGLSKWQWKRLHEKKARQKEKTLLQQDRQVYLARIRSQLRGKIF
Q9C8S9________________SITGSLWNRISS-RNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain