SustainPineDB

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Assembly info
Unigenes
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44379

Length: 246 nt

UniGene Fasta

>uagpf_v2_unigene44379
CGTCGTGACCTTGGCTGTCACTCACCAAAGTTTTATGAAGAGGCTATACAGTTGTACAAGAAGATAAACAGCCTTTTAGCACAAGGAGATCGTACGTCACTGCGGCAACTAGTAACAGAGAATATGTACACAATTTTCAAGAGGGAAATAAAACAAAGGGGGTCTACTTGGTCTCGTGTCCATTGGGAAATGATAGAGCCTGCTGTTAGAGTACGAACATTACGAGCTCGTATGATAGCTGTGGAC

Ace file of the UniGene uagpf_v2_unigene44379

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59064	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] dbj\|BAC42743.1\| unknown protein [Arabidopsis thaliana] gb\|AED93679.1\| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [A	-	-	4.0e-17	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	mitochondrial inner membrane translocase subunit tim44-related protein	-	-	5.30335e-41	75%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Membrane transporter, Tim44-related/Ribosomal protein L45	IPR007379	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMY8

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 82 - 190

Fln protein: RRDLGCHSPKFYEEAIQLYKKINSLLAQGDRTSLRQLVTENMYTIFKREIKQRGSTWSRVHWEMIEPAVRVRTLRARMIAVD

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCAAAGTTTTATGAAGAGGCTATACAGTTGTACAAGAAGATAAACAGCCTTTTAGCACAAGGAGATCGTACGTCACTGCGGCAACTAGTAACAGAGAATATGTACACAATTTTCAAGAGGGAAATAAAACAAAGGGGGTCTACTTGGTCTCGTGTCCATTGGGAAATGATAGAGCCTGCTGTTAGAGTACGAACATTACGAGCTCGTATGATAGCTGTGGAC

Fln Alignment:

uagpf_mira_rep_c44233___PKFYEEAIQLYKKINSLLAQGDRTSLRQLVTENMYTIFKREIKQRGSTWSRVHWEMIEPAVRVRTLRARMIAVD
B8LMY8________________PKFYEEAIQLYKEINSHLAQGDRTSLRQLVTENMYTIFKREIKQRETTWSRVHWEMIEPTVRIRTLRARMIAVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain