SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44211

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene44211
TCTACAAGATCAAACATGTTGCAATAGCAGCGTGGAGAAGTTCAAAAGCACGTTTTGTGGCGCGGGGATTCTCACAGGTAGAGGGAGTTGATTATGAGAAGACATTCACACCGGTTGCTCACTACACTACCATTAGAGCAGTTATTTCTATAGCAACTGAGATGGGTTGGAGGATTCACTAAAGGGATGTGAAGACCGCCTTTCTCAATGGTGTTACACAAGAGGAGGTGTACATTAAGCAACCACAGGGCTTTGAGGTGCATGGGAGGGAGTCTCATATGTGTAGGCTTAAGAAAGCCTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene44211 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72153	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB	-	-	9.0e-29	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	reverse transcriptase	-	-	1.1108e-37	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 225 aas, your sequence is shorter than subject: 100 - 363

Fln protein: YKIKHVAIAAWRSSKARFVARGFSQVEGVDYEKTFTPVAHYTTIRAVISIATEMGWRIH*RDVKTAFLNGVTQEEVYIKQPQGFEVHGRESHMCRLKKA*

Protein Length: 101

Fln nts: TCTACAAGATCAAACATGTTGCAATAGCAGCGTGGAGAAGTTCAAAAGCACGTTTTGTGGCGCGGGGATTCTCACAGGTAGAGGGAGTTGATTATGAGAAGACATTCACACCGGTTGCTCACTACACTACCATTAGAGCAGTTATTTCTATAGCAACTGAGATGGGTTGGAGGATTCACTAAAGGGATGTGAAGACCGCCTTTCTCAATGGTGTTACACAAGAGGAGGTGTACATTAAGCAACCACAGGGCTTTGAGGTGCATGGGAGGGAGTCTCATATGTGTAGGCTTAAGAAAGCCTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c44005___YKIKHVAIAAWRSSKARFVARGFSQVEGVDYEKTFTPVAHYTTIRAVISIATEMGWRIH*RDVKTAFLNGVTQEEVYIKQPQGFEVHGRESHMCRLKKA
B8LKV8________________YKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain