SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44209

Length: 165 nt

UniGene Fasta

>uagpf_v2_unigene44209
CGTCGTGACCTTGGCTGTCACTCATATTTTCATAACCCGCATTGCAGCAGTATTAAGTATACCGTTGTTGGCAATCTACCCATTTATAGGCATGCTATCAGATGTTCTACTGTGGCTAGCCATCACCTCTGCATCCTTTTTAAAGATATATTAGCAGTGACAATT

Ace file of the UniGene uagpf_v2_unigene44209

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11852	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MFS_1 domain containing protein	-	-	3.0e-10	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	major facilitator superfamily expressed	-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	71%
Blast2go	response to chemical stimulus	GO:0042221	Biological Process	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	membrane	GO:0016020	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Tetracycline resistance protein, TetA/multidrug resistance protein MdtG	IPR001958	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP10

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 51 - 512

Fln protein: VVTLAVTHIFITRIAAVLSIPLLAIYPFIGMLSDVLLWLAITSASFLKIY*

Protein Length: 52

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTTCATAACCCGCATTGCAGCAGTATTAAGTATACCGTTGTTGGCAATCTACCCATTTATAGGCATGCTATCAGATGTTCTACTGTGGCTAGCCATCACCTCTGCATCCTTTTTAAAGATATATTAGCAGTGACAATT

Fln Alignment:

uagpf_mira_rep_c44003___IFITRIAAVLSIPLLAIYPFIGMLSDVLLWLAITSASFLK
B8LP10________________ILITRIAAVLSIPVLACYPFISMLSGGFLWLVINCASLLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain