SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44091

Length: 313 nt

UniGene Fasta

>uagpf_v2_unigene44091
CGTCGTGACCTTGGCTGTCACTCACATTTCTCTGTACGGGAACAGATTGACAGGAAAAGTGCCCGAATCCTTTGGAAATTGTTCTGCGCTGGAGACTCTGGATCTGGGAAATAACTTTCTCAGTGGCCCTATCCCCTCTCAGCTTGGCTTGCTCGCTAGACTACAAAACCTGTCTCTTCAGGAAAACCAACTCAATGGGGGAATCCCACATTCACTGCTTAATTGCACGGAGTTACGCATAATAGATTTGTGTGCGAACAAGCTCAGTGGAGAAATCCCGTCGGAGATAGGCACAAGGCTCACAAATTTGAAG

Ace file of the UniGene uagpf_v2_unigene44091

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70661	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] sp\|Q9LVP0.1\|Y5639_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At5g63930; Flags: Precursor dbj\|BAA96896.1\| receptor-like protein kinase [Arabidopsis th	-	-	1.0e-13	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	lrr receptor-like serine threonine-protein kinase gso2-like	-	-	2.9079e-18	66%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 104 - 551

Fln protein: VVTLAVTHISLYGNRLTGKVPESFGNCSALETLDLGNNFLSGPIPSQLGLLARLQNLSLQENQLNGGIPHSLLNCTELRIIDLCANKLSGEIPSEIGTRLTNLK

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCACATTTCTCTGTACGGGAACAGATTGACAGGAAAAGTGCCCGAATCCTTTGGAAATTGTTCTGCGCTGGAGACTCTGGATCTGGGAAATAACTTTCTCAGTGGCCCTATCCCCTCTCAGCTTGGCTTGCTCGCTAGACTACAAAACCTGTCTCTTCAGGAAAACCAACTCAATGGGGGAATCCCACATTCACTGCTTAATTGCACGGAGTTACGCATAATAGATTTGTGTGCGAACAAGCTCAGTGGAGAAATCCCGTCGGAGATAGGCACAAGGCTCACAAATTTGAAG

Fln Alignment:

uagpf_mira_rep_c43815___VTHISLYGNRLTGKVPESFGNCSALETLDLGNNFLSGPIPSQLGLLARXXXXXXXXXXXXGGIPHSLLNCTELRIIDLCAN-KLSGEIPSEIGTRLTNLK
B8LRW5________________VVSLNLTGMGLQGPISPLLANLSFLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGL-LRNLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain