SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44053

Length: 241 nt

UniGene Fasta

>uagpf_v2_unigene44053
CGTCGTGACCTTGGCTGTCACTCAAATTTGATGCTGGGAGGCTGGATATAGAAATGTCAGCTATGTTGAAGGATCAGCTTGTTAAGGTCTTCTCAGTAATGAAGCCAGGGTGGTTATCTCGTTATGAACCTGAGCTAGATGCTTTTCTTCAGTTCCTTATTTGGAGGTTCTCGATTTGGGTGGATAAGCCTACTCCCGGGAATGCCCTTATGAATCTGAGGTACAGGAACGAGGATGCTAC

Ace file of the UniGene uagpf_v2_unigene44053

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8942	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	TED3; TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding; K06664 peroxin-2	-	-	63%
FL-Next	sp=Peroxisome biogenesis protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	79%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	79%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%
Blast2go	peroxisomal membrane	GO:0005778	Cellular Component	79%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pex, N-terminal	IPR006845	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CA86

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 219 aas, your sequence is shorter than subject: 79 - 333

Fln protein: S*PWLSLKFDAGRLDIEMSAMLKDQLVKVFSVMKPGWLSRYEPELDAFLQFLIWRFSIWVDKPTPGNALMNLRYRNEDA

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGATGCTGGGAGGCTGGATATAGAAATGTCAGCTATGTTGAAGGATCAGCTTGTTAAGGTCTTCTCAGTAATGAAGCCAGGGTGGTTATCTCGTTATGAACCTGAGCTAGATGCTTTTCTTCAGTTCCTTATTTGGAGGTTCTCGATTTGGGTGGATAAGCCTACTCCCGGGAATGCCCTTATGAATCTGAGGTACAGGAACGAGGATGCTAC

Fln Alignment:

uagpf_mira_rep_c43759___KFDAGRLDIEMSAMLKDQLVKVFSVMKPGWLSRYEPELDAFLQFLIWRFSIWVDKPTPGNALMNLRYRNE
Q9CA86________________QFDAARLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain