SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene44017

Length: 243 nt

UniGene Fasta

>uagpf_v2_unigene44017
CGTCGTGACCTTGGCTGTCACTCAGAATTATTCAATGCTTGTAAGCAGATGCACCCTGATACATTGCTCCTGAAGTTAGTACACATACTTCAATATAGTTCCCAACCTGGTTTACGATCTATGGCTGCTGTGCTCCTCCGTAAGCAAACTGGTCTTTGGACTCAAATCGGGGAATCCTCTCGTTGTGCATTGAAGGAGCAAATACTAGTCTGCTTGCAGAGGGAGGAAACAAAGAGTGTGCTG

Ace file of the UniGene uagpf_v2_unigene44017

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2257	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	52%
Blast2go	ran-binding protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	81%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	81%
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	81%
Blast2go	lyase activity	GO:0016829	Molecular Function	81%
Blast2go	cell wall	GO:0005618	Cellular Component	81%
Blast2go	phycobilisome	GO:0030089	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	PBS lyase HEAT-like repeat	IPR004155	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Calcium binding protein	IPR015754	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SIW9

Fln msg: Distance to subject end: 998 aas, your sequence is shorter than subject: 81 - 1110

Fln protein: RRDLGCHSELFNACKQMHPDTLLLKLVHILQYSSQPGLRSMAAVLLRKQTGLWTQIGESSRCALKEQILVCLQREETKSVL

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAATTATTCAATGCTTGTAAGCAGATGCACCCTGATACATTGCTCCTGAAGTTAGTACACATACTTCAATATAGTTCCCAACCTGGTTTACGATCTATGGCTGCTGTGCTCCTCCGTAAGCAAACTGGTCTTTGGACTCAAATCGGGGAATCCTCTCGTTGTGCATTGAAGGAGCAAATACTAGTCTGCTTGCAGAGGGAGGAAACAAAGAGTGTGCTG

Fln Alignment:

uagpf_mira_rep_c43705___GCHSELFNACKQMHPDTLLLKLVHILQYSSQPGLRSMAAVLLRK-----QTGLWTQIGESSRCALKEQILVCLQREETKSVL
D8SIW9________________GHAEQLFNACKAQHPDTLVLKLVHTLQ-SGHVETRAMSAILLRKLITKDEVSLWSLLNPNTHATLKTQLLVCVQREETKSTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain