SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43927

Length: 171 nt

UniGene Fasta

>uagpf_v2_unigene43927
CGTCGTGACCTTGGCTGTCACTCAATTTGAAAACTATCTTTGCCAACATGGGATCAAACATCAAACAACTGTGCCTTATAATCCCCAACAGAATGGTGTAGCTGAAACAATGAATAGGACAATCTTAAATATGGTACGATCCATGCTCTTCTTCAAAAATGTAAAGATAAT

Ace file of the UniGene uagpf_v2_unigene43927

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31937	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	copia-type reverse transcriptase-like protein [Arabidopsis thaliana]	-	-	1.0e-36	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	copia-type polyprotein	-	-	3.58732e-43	63%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 146 aas, your sequence is shorter than subject: 56 - 407

Fln protein: VVTLAVTQFENYLCQHGIKHQTTVPYNPQQNGVAETMNRTILNMVRSMLFFKNVKI

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGAAAACTATCTTTGCCAACATGGGATCAAACATCAAACAACTGTGCCTTATAATCCCCAACAGAATGGTGTAGCTGAAACAATGAATAGGACAATCTTAAATATGGTACGATCCATGCTCTTCTTCAAAAATGTAAAGATAAT

Fln Alignment:

uagpf_mira_rep_c43563___QFENYLCQHGIKHQTTVPYNPQQNGVAETMNRTILNMVRSMLFFKNV
B8LKX7________________EFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain