SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43890

Length: 168 nt

UniGene Fasta

>uagpf_v2_unigene43890
CGTCGTGACCTTGGCTGTCACTCAGTTTGGTGGGGTAAAAATAATCAACAGAGTTGCTCCAGCATTCTTAGTGCCTGTTTTGTTGTCGGTGTTTCTAATTTTCATTGGCATCCTTTCAGCCTCTCATCGCAATCTTTCTTCTGAGATCACTGGCTTAAGATTGAGCAC

Ace file of the UniGene uagpf_v2_unigene43890

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene66471	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation chloride cotransporter n=2 Tax=Citrus RepID=D2U833_9ROSI	-	-	2.0e-09	62%
FL-Next	sp=Cation-chloride cotransporter 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	cation-chloride co-transporter 1	-	-	7.37972e-14	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	7.37972e-14	72%
Blast2go	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	7.37972e-14	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.37972e-14	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid permease domain	IPR004841	-	0.0	-
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2UVJ5

Fln msg: Distance to subject end: 640 aas, your sequence is shorter than subject: 55 - 975

Fln protein: VVTLAVTQFGGVKIINRVAPAFLVPVLLSVFLIFIGILSASHRNLSSEITGLRLS

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGGTGGGGTAAAAATAATCAACAGAGTTGCTCCAGCATTCTTAGTGCCTGTTTTGTTGTCGGTGTTTCTAATTTTCATTGGCATCCTTTCAGCCTCTCATCGCAATCTTTCTTCTGAGATCACTGGCTTAAGATTGAGCAC

Fln Alignment:

uagpf_mira_rep_c43501___VTLAVTQFGGVKIINRVAPAFLVPVLLSVFLIFIGILSASHRNLSSEITGLRL
Q2UVJ5________________ILLCFIVFGGVKMINRVAPAFLVPVLLSIFCIFIGIFLAKTDDPDNGITGLRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain