SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43883

Length: 242 nt

UniGene Fasta

>uagpf_v2_unigene43883
CGTCGTGACCTTGGCTGTCACTCATGACTTTGATGAAGGAGGAGCAATATACTTCACTGATTCTAGTAACAACTTCCAAAGAAGACACTTTTTGTTGTCTATCTTCAGTGGAGATGACACTGGTAGGTTGATGAAATATGATCCAAAGAGTGGGGAAATCACTGTGCTCCTTAGGAACCTCATGTTTGCAAATGGAGTTGCTATGAGCAAAGATTTCTCATTTCTGCTTGTTTCAGAAACAA

Ace file of the UniGene uagpf_v2_unigene43883

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13337	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	strictosidine synthase-like 3 [Arabidopsis thaliana] gb\|AAL31926.1\|AF419594_1 At1g08470/T27G7_9 [Arabidopsis thaliana] gb\|AAL36403.1\| unknown protein [Arabidopsis thaliana] gb\|AAM51389.1\| unknown protein [Arabidopsis thaliana] gb\|AEE28296.1\| strictosidine	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	strictosidine synthase family protein	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Strictosidine synthase.	EC:4.3.3.2	-	0.0	69%

Source	KEGGs	Term	Identity
Blast2go	Indole alkaloid biosynthesis	00901	69%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	69%
Blast2go	Metabolic pathways	01100	69%
Blast2go	Biosynthesis of secondary metabolites	01110	69%

Source	GOs	Term	Type	Identity
Blast2go	alkaloid biosynthetic process	GO:0009821	Biological Process	69%
Blast2go	strictosidine synthase activity	GO:0016844	Molecular Function	69%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	69%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	NHL repeat	IPR001258	-	-
Sma3		IPR004141	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW47

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 80 - 423

Fln protein: VVTLAVTHDFDEGGAIYFTDSSNNFQRRHFLLSIFSGDDTGRLMKYDPKSGEITVLLRNLMFANGVAMSKDFSFLLVSET

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGACTTTGATGAAGGAGGAGCAATATACTTCACTGATTCTAGTAACAACTTCCAAAGAAGACACTTTTTGTTGTCTATCTTCAGTGGAGATGACACTGGTAGGTTGATGAAATATGATCCAAAGAGTGGGGAAATCACTGTGCTCCTTAGGAACCTCATGTTTGCAAATGGAGTTGCTATGAGCAAAGATTTCTCATTTCTGCTTGTTTCAGAAACAA

Fln Alignment:

uagpf_mira_rep_c43493___DFDEGGAIYFTDSSNNFQRRHFLLSIFSGDDTGRLMKYDPKSGEITVLLRNLMFANGVAMSKDFSFLLVSET
A9NW47________________DIDMDGNVYFTDSSTIYQRKNFIVLVFSAEDSGRVLKFDPRTGQTQVLARGIRLPNGLSLSKDQSFFVFTES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain