SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43748

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene43748
CGTCGTGACCTTGGCTGTCACTCATCGAAGCAAACTATATTGTTGGGTTTAAAAATGATGGAAAATTACAGCATTGCATGTGGATTTATTAATTGATGCAGGCATTTCAATAGATTTCAGTCCTATGTTGCCCAATAATATAATATCAGCAATGAAAAAGTATAACTGGGGAGCTCTTTCATTTGACTATAGATTATGTAAAACAAATGTAACAAGCAAGTCTGCAAT

Ace file of the UniGene uagpf_v2_unigene43748

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70772	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative aldehyde oxidase-like protein n=4 Tax=Oryza sativa RepID=ALDOL_ORYSJ	-	-	2.0e-17	75%
FL-Next	sp=Putative aldehyde oxidase-like protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	75%
Blast2go	aldehyde oxidase	-	-	1.40411e-19	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	1.40411e-19	87%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	IPR000674	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin dehydrogenase, FAD-binding	IPR002346	-	-
Sma3	[2Fe-2S]-binding	IPR002888	-	-
Sma3	CO dehydrogenase flavoprotein, C-terminal	IPR005107	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	IPR008274	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2	IPR016169	-	-
Sma3	Aldehyde oxidase/xanthine dehydrogenase	IPR016208	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Z351

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 424 aas, your sequence is shorter than subject: 75 - 1342

Fln protein: VVTLAVTHRSKLYCWV*K*WKITALHVDLLIDAGISIDFSPMLPNNIISAMKKYNWGALSFDYRLCKTNVTSKSA

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCGAAGCAAACTATATTGTTGGGTTTAAAAATGATGGAAAATTACAGCATTGCATGTGGATTTATTAATTGATGCAGGCATTTCAATAGATTTCAGTCCTATGTTGCCCAATAATATAATATCAGCAATGAAAAAGTATAACTGGGGAGCTCTTTCATTTGACTATAGATTATGTAAAACAAATGTAACAAGCAAGTCTGCAAT

Fln Alignment:

uagpf_mira_rep_c43282___KITALHVDLLIDAGISIDFSPMLPNNIISAMKKYNWGALSFDYRLCKTNVTSKS
Q6Z351________________KITALHLDLLINAGISADASPVIPGTIISGLKKYNWGALSFDVKLCKTNNTSKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain