SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43719

Length: 239 nt

UniGene Fasta

>uagpf_v2_unigene43719
CGTCGTGACCTTGGCTGTCACTCAAATTGCAGATTGGAGGATCATATTGAAGACACTGTGTGCTGCTTGCCTTGTCCCAGAAAATCCTGATGATCGAGATGCTGAAACACGTGTTAATGCCGTTCGTGGACTAGCAACAGTTTGTGAAACATTGACTGGTGCATGTATAGACTCCACTCTGAGTGTCCCAGCTAGTGAAGAGTCTCTATTAGATGTCATAAAGATGCTGTTGTGGACTG

Ace file of the UniGene uagpf_v2_unigene43719

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20924	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tubulin-folding cofactor [Oryza sativa Japonica Group]	-	-	4.0e-34	57%
FL-Next	tr=Beta-tubulin cofactor d, putative; Ricinus communis (Castor bean).	-	-	0.0	47%
Blast2go	tubulin-specific chaperone d-like	-	-	1.89456e-42	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.89456e-42	73%
Blast2go	cytokinesis	GO:0000910	Biological Process	1.89456e-42	73%
Blast2go	microtubule-based process	GO:0007017	Biological Process	1.89456e-42	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RD93

Fln msg: Distance to subject end: 393 aas, your sequence is shorter than subject: 79 - 1260

Fln protein: VVTLAVTQIADWRIILKTLCAACLVPENPDDRDAETRVNAVRGLATVCETLTGACIDSTLSVPASEESLLDVIKMLLWT

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGCAGATTGGAGGATCATATTGAAGACACTGTGTGCTGCTTGCCTTGTCCCAGAAAATCCTGATGATCGAGATGCTGAAACACGTGTTAATGCCGTTCGTGGACTAGCAACAGTTTGTGAAACATTGACTGGTGCATGTATAGACTCCACTCTGAGTGTCCCAGCTAGTGAAGAGTCTCTATTAGATGTCATAAAGATGCTGTTGTGGACTG

Fln Alignment:

uagpf_mira_rep_c43242___WRIILKTLCAACLVPENPDDRDAETRVNAVRGLATVCETLTGACIDSTLSVPASEESLLDVIK
B9RD93________________WKYVLLKLCSSCLIEDDPEDRDAEARVNAVKGLISVCKTLTRARECSDICSGEDRMSLWHLIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain