SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene43578

Length: 186 nt

UniGene Fasta

>uagpf_v2_unigene43578
CGTCGTGACCTTGGCTGTCACTCAATTCGCAAGCTGCAGCAATGGGGATATCCAAGTCTTACGAGGAAGCTCGAAAACAGCGATTGGAGGAGAATAAGAAGCGCATGGAGGATCTCGGGCTGACAAAGCTCCGCGAAGGCATTCAGGCGGTGGCTTCTGCTTCCAAATCGCAGACGCGGCAGGTGG

Ace file of the UniGene uagpf_v2_unigene43578

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1900	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/B3 domain-containing transcription factor [Arabidopsis thaliana] sp\|Q1G3M3.1\|Y3918_ARATH RecName: Full=B3 domain-containing protein At3g19184 gb\|ABF59230.1\| unknown protein [Arabidopsis thaliana] dbj\|BAH30459.1\| hypothetical protein [Arabidopsis thali	-	-	4.00001e-41	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	57%
Blast2go	b3 domain-containing protein	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6GU71

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 48 - 316

Fln protein: MGISKSYEEARKQRLEENKKRMEDLGLTKLREGIQAVASASKSQTRQV

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGCAAGCTGCAGCA_-_ATGGGGATATCCAAGTCTTACGAGGAAGCTCGAAAACAGCGATTGGAGGAGAATAAGAAGCGCATGGAGGATCTCGGGCTGACAAAGCTCCGCGAAGGCATTCAGGCGGTGGCTTCTGCTTCCAAATCGCAGACGCGGCAGGTGG

Fln Alignment:

uagpf_mira_rep_c43021___MGISKSYEEARKQRLEENKKRMEDLGLTKLREGIQAVA-SASKSQTR
F6GU71________________MAAASSYEEARKQHLEENKKRLEDLGILKISQSLSLLTNSNSKSQKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain